single-cell-data TileDB-SOMA issues

single-cell-data / TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

https://tiledbsoma.readthedocs.io

MIT License

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issues

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[c++] Add `SOMAArray::config_options` getter

#3146 nguyenv opened 1 hour ago
1
[r] Handle numeric `coords` better in `SOMASparseNDArray$read()`

#3145 mojaveazure closed 3 hours ago
0
[Backport release-1.15] [python] Drop `anndata` version pin; use `CSCDataset`/`CSRDataset`

#3144 github-actions[bot] closed 8 hours ago
0
[python] Extend `MultiscaleImage` testing

#3143 nguyenv opened 8 hours ago
1
[python] Avoid RCs of dependent packages for our RC

#3142 johnkerl closed 5 hours ago
1
[python] Drop `anndata` version pin; use `CSCDataset`/`CSRDataset`

#3141 johnkerl closed 8 hours ago
1
[python] Connect resizers to the Python API

#3140 johnkerl opened 1 day ago
1
[c++] Unit-test the dataframe upgrader

#3139 johnkerl opened 1 day ago
1
[Backport release-1.15] Do not fatal on 1.15-related assertions

#3138 github-actions[bot] closed 3 days ago
0
Do not fatal on 1.15-related assertions

#3137 johnkerl closed 3 days ago
1
[c++,python] Fix default reads on unwritten dense arrays

#3136 nguyenv closed 11 hours ago
1
[r] 1.15.0rc0

#3135 johnkerl closed 3 days ago
1
TileDB-SOMA 1.15.0rc1

#3134 johnkerl opened 3 days ago
0
[r] `main` version now that `release-1.15` branch exists

#3133 johnkerl closed 3 days ago
0
[c++] Dataframe-sizing helpers

#3132 johnkerl closed 3 days ago
2
[c++] Internal function `can_upgrade_soma_joinid_shape` for experiment-level resize

#3131 johnkerl closed 3 days ago
3
[c++] Propagate Python/R function names to C++ for upgrade/resize methods

#3130 johnkerl closed 3 days ago
2
[r] Remove last `private$.tiledb_array` and `self$object` from R classes [WIP]

#3129 johnkerl opened 3 days ago
0
[python] Fix `MultiscaleImage.read_spatial_region` full region read

#3128 jp-dark closed 3 days ago
1
[c++/python/r] Rename a helper function

#3127 johnkerl closed 3 days ago
1
[python] `tiledbsoma.io.to_anndata` performance work

#3126 bkmartinjr opened 4 days ago
1
[c++] Trivial name-shortens in unit-test code

#3125 johnkerl closed 3 days ago
1
[r] Remove TileDB-R accesses within `tests/testthat`

#3124 johnkerl opened 4 days ago
0
Add Visium ingestor and sample spatial notebook

#3123 jp-dark closed 4 days ago
1
[r] `DESCRIPTION` and `NEWS.md` for #3121

#3122 johnkerl closed 4 days ago
0
[r] Push `attrnames` down to C++

#3121 johnkerl closed 4 days ago
4
[python] Use `somacore` 1.0.20

#3120 johnkerl closed 4 days ago
1
[python] Fix retrieval of named levels from a MultiscaleImage

#3119 aaronwolen closed 4 days ago
1
[python] Fix f-strings in multiscaleimage error messages

#3118 aaronwolen closed 4 days ago
1
[spatial] Updates to the ingestor

#3117 jp-dark closed 4 days ago
2
[python] Add the Python implementation of the `Scene` collection

#3116 jp-dark closed 5 days ago
1
[python/r/c++] Restore `platform_config` sensitivity in `update_dataframe_schema`

#3115 johnkerl opened 5 days ago
0
[python] Update coordinate space <-> JSON converters

#3114 nguyenv closed 5 days ago
1
[c++/python] Push `update_dataframe_schema` down to `libtiledbsoma`

#3113 johnkerl closed 5 days ago
1
[python] Add implementation of the `MultiscaleImage` to `main`

#3112 jp-dark closed 5 days ago
1
[c++/python] Check `arrow_is_string_type` in `_update_dataframe`

#3111 nguyenv closed 6 days ago
2
[python] Add `Scene` tests

#3110 nguyenv closed 5 days ago
1
[python] Add Python implementation of the `PointCloudDataFrame` class

#3109 jp-dark closed 6 days ago
1
[spatial] Add PointCloud class to main branch

#3108 jp-dark opened 6 days ago
0
[c++] Fail earlier if `n_buffers` is not as expected

#3107 johnkerl closed 6 days ago
2
[python] `setuptools>=70.1` in sdist GHA

#3106 ryan-williams closed 6 days ago
2
Daily GitHub Actions Build Fail on Tue, October 1st 2024

#3105 github-actions[bot] closed 6 days ago
1
Rename PointCloud -> PointCloudDataFrame on spatial branch

#3104 jp-dark closed 6 days ago
1
Minor update to `.gitignore`

#3103 johnkerl closed 6 days ago
1
Daily GitHub Actions Build Fail on Tue, October 1st 2024

#3102 github-actions[bot] opened 6 days ago
0
[python] Update coordinate space <-> JSON converters

#3101 nguyenv closed 5 days ago
4
[c++/python/r] Use `libtiledbsoma` for R schema evolution

#3100 johnkerl closed 5 days ago
0
[c++] Fix a minor typo in logging statements

#3099 johnkerl closed 5 days ago
2
[python/c++] Update TileDB-SOMA to somacore 1.0.19

#3098 jp-dark closed 1 week ago
1
[python] Add `PointCloud` tests

#3097 nguyenv closed 1 week ago
1