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single-cell-data
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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
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[python] Work around pyarrow>=13 issue on MacOS, `release-1.11` branch
#2738
johnkerl
closed
3 weeks ago
2
[python] Work around pyarrow>=13 issue on MacOS, `release-1.10` branch
#2737
johnkerl
closed
3 weeks ago
2
[python] Replace `TileDBObject` with `SOMAObject`; Remove `tiledb.TileDBError` usage 4/5
#2736
nguyenv
closed
3 weeks ago
1
[python] Use bindings for `SOMAGroup` 3/5
#2735
nguyenv
closed
3 weeks ago
1
[python] Work around pyarrow>=13 issue on MacOS, `main` branch
#2734
johnkerl
closed
3 weeks ago
3
[python] Release GIL where necessary in pybind11 code
#2733
nguyenv
opened
3 weeks ago
2
[python] Add `pybind11` bindings for `SOMAGroup` 2/5
#2732
nguyenv
closed
3 weeks ago
1
[c++] More `SOMAGroup` refinements 1/5
#2731
nguyenv
closed
3 weeks ago
1
[r,c++] Support dense nd array write case
#2730
eddelbuettel
closed
2 weeks ago
4
[spatial] Add presence matrices to experimental ingestor
#2729
jp-dark
closed
3 weeks ago
1
[Backport release-1.12] [python] Support `tiledbsoma.io.update_obs` with post-nullable non-string attributes
#2728
github-actions[bot]
closed
4 weeks ago
1
[Backport release-1.12] [c++] Fix enum-of-bool leveling
#2727
github-actions[bot]
closed
4 weeks ago
0
[python] for an Experiment, `soma.open` is 3X slower than `soma.Experiment.open`
#2726
bkmartinjr
opened
4 weeks ago
3
[Backport release-1.12] [c++] Fix a nightly-build issue
#2725
github-actions[bot]
closed
4 weeks ago
0
[Backport release-1.12] [python] Deprecate `tiledb_ctx` usage in `TileDBSOMAContext`
#2724
github-actions[bot]
closed
4 weeks ago
0
[c++] Fix enum-of-bool leveling
#2723
johnkerl
closed
4 weeks ago
2
[python] Augment unit-testing for enumeration extensions
#2722
johnkerl
closed
4 weeks ago
0
[c++] Add additional layout string representations
#2721
nguyenv
opened
4 weeks ago
4
[python] Deprecate `tiledb.Filter` getters in `PlatformConfig`
#2720
nguyenv
closed
4 weeks ago
1
[python] Support `tiledbsoma.io.update_obs` with post-nullable non-string attributes
#2719
johnkerl
closed
4 weeks ago
2
[c++] Fix a nightly-build issue
#2718
johnkerl
closed
4 weeks ago
4
[python] Support `tiledbsoma.io.update_obs` with post-nullable non-string attributes
#2717
johnkerl
closed
3 weeks ago
0
[r] R versioning past `release-1.12` branch
#2716
johnkerl
closed
4 weeks ago
0
Update to core 2.24, tiledb-py 0.30, tiledb-r 0.28
#2715
johnkerl
closed
4 weeks ago
1
[r] Replace `vfs.is_dir` with `SOMADataFrame::exists` et al.
#2714
johnkerl
opened
4 weeks ago
0
[Backport release-1.11] [r/ci] Unbreak `r-valgrind` CI
#2713
github-actions[bot]
closed
4 weeks ago
0
Small updates to match somacore
#2712
jp-dark
closed
4 weeks ago
3
[r/ci] Unbreak `r-valgrind` CI
#2711
johnkerl
closed
4 weeks ago
5
[Backport release-1.11] [r/ci] Unbreak `pkgdown` CI
#2710
github-actions[bot]
closed
4 weeks ago
0
[c++] libtiledbsoma may need a filtering layer
#2709
eddelbuettel
opened
4 weeks ago
0
[c++] Add `SOMAArray::config_options` getter
#2708
nguyenv
opened
4 weeks ago
1
[python] `tiledbsoma.io.update_uns` (parent issue)
#2707
johnkerl
opened
1 month ago
0
[spatial] Lint/typecheck fixes
#2706
ryan-williams
closed
4 weeks ago
1
[spatial] Add tutorial notebook
#2705
ryan-williams
closed
4 weeks ago
1
[r,py,c++] Support dataframe write path
#2704
eddelbuettel
closed
4 weeks ago
8
[r/ci] Unbreak `pkgdown` CI
#2703
johnkerl
closed
4 weeks ago
5
[r/ci] Unbreak `pkgdown` and `r-valgrind` CI
#2702
johnkerl
closed
4 weeks ago
0
[python] Deprecate `tiledb.Filter{List}` getters in `PlatformConfig`
#2701
nguyenv
closed
4 weeks ago
0
[c++] Add `SOMAArray.platform_config()` getter
#2700
nguyenv
opened
1 month ago
0
[python] Deprecate `tiledb.Filter{List}` getters for `PlatformConfig`
#2699
nguyenv
closed
1 week ago
0
R and Python create groups with incompatible SOMA metadata
#2698
bkmartinjr
opened
1 month ago
0
Daily GitHub Actions Build Fail on Sat, June 8th 2024
#2697
github-actions[bot]
closed
1 month ago
1
Error while Ingesting Multiple H5ad to One SOMA Object : ArrowInvalid: Failed to parse string: '<category column>' as a scalar of type double[Bug]
#2696
danishzmalik
closed
2 weeks ago
13
[doc] Update README.md badge for Python CI (closes #2694) [ci skip]
#2695
eddelbuettel
closed
1 month ago
0
[Bug] README.md points at stale CI badge
#2694
eddelbuettel
closed
1 month ago
0
[python] Deprecate `tiledb_ctx` usage in `TileDBSOMAContext`
#2693
nguyenv
closed
4 weeks ago
1
[python] Try 3.12 again [WIP]
#2692
johnkerl
opened
1 month ago
13
[Backport release-1.11] [r] Use `arrow` minimum 14, not 15
#2691
github-actions[bot]
closed
1 month ago
0
[r] Use `arrow` minimum 14, not 15
#2690
johnkerl
closed
1 month ago
1
[Backport release-1.11] [ci] Switch from 16MB to 32MB buffer sizes for tiny GHA runners
#2689
github-actions[bot]
closed
1 month ago
0
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