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single-cell-data
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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
MIT License
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[r] R versioning past `release-1.12` branch
#2716
johnkerl
closed
1 month ago
0
Update to core 2.24, tiledb-py 0.30, tiledb-r 0.28
#2715
johnkerl
closed
1 month ago
1
[r] Replace `vfs.is_dir` with `SOMADataFrame::exists` et al.
#2714
johnkerl
closed
2 days ago
1
[Backport release-1.11] [r/ci] Unbreak `r-valgrind` CI
#2713
github-actions[bot]
closed
1 month ago
0
Small updates to match somacore
#2712
jp-dark
closed
1 month ago
3
[r/ci] Unbreak `r-valgrind` CI
#2711
johnkerl
closed
1 month ago
5
[Backport release-1.11] [r/ci] Unbreak `pkgdown` CI
#2710
github-actions[bot]
closed
1 month ago
0
[c++] libtiledbsoma may need a filtering layer
#2709
eddelbuettel
closed
2 weeks ago
0
[c++] Add `SOMAArray::config_options` getter
#2708
nguyenv
closed
2 weeks ago
2
[python] `tiledbsoma.io.update_uns` (parent issue)
#2707
johnkerl
opened
1 month ago
0
[spatial] Lint/typecheck fixes
#2706
ryan-williams
closed
1 month ago
1
[spatial] Add tutorial notebook
#2705
ryan-williams
closed
1 month ago
1
[r,py,c++] Support dataframe write path
#2704
eddelbuettel
closed
1 month ago
8
[r/ci] Unbreak `pkgdown` CI
#2703
johnkerl
closed
1 month ago
5
[r/ci] Unbreak `pkgdown` and `r-valgrind` CI
#2702
johnkerl
closed
1 month ago
0
[python] Deprecate `tiledb.Filter{List}` getters in `PlatformConfig`
#2701
nguyenv
closed
1 month ago
0
[c++] Add `SOMAArray.platform_config()` getter
#2700
nguyenv
closed
1 week ago
1
[python] Deprecate `tiledb.Filter{List}` getters for `PlatformConfig`
#2699
nguyenv
closed
4 weeks ago
0
R and Python create groups with incompatible SOMA metadata
#2698
bkmartinjr
opened
1 month ago
0
Daily GitHub Actions Build Fail on Sat, June 8th 2024
#2697
github-actions[bot]
closed
1 month ago
1
Error while Ingesting Multiple H5ad to One SOMA Object : ArrowInvalid: Failed to parse string: '<category column>' as a scalar of type double[Bug]
#2696
danishzmalik
closed
1 month ago
13
[doc] Update README.md badge for Python CI (closes #2694) [ci skip]
#2695
eddelbuettel
closed
1 month ago
0
[Bug] README.md points at stale CI badge
#2694
eddelbuettel
closed
1 month ago
0
[python] Deprecate `tiledb_ctx` usage in `TileDBSOMAContext`
#2693
nguyenv
closed
1 month ago
1
[python] Try 3.12 again [WIP]
#2692
johnkerl
opened
1 month ago
13
[Backport release-1.11] [r] Use `arrow` minimum 14, not 15
#2691
github-actions[bot]
closed
1 month ago
0
[r] Use `arrow` minimum 14, not 15
#2690
johnkerl
closed
1 month ago
1
[Backport release-1.11] [ci] Switch from 16MB to 32MB buffer sizes for tiny GHA runners
#2689
github-actions[bot]
closed
1 month ago
0
[ci] Switch from 16MB to 32MB buffer sizes for tiny GHA runners
#2688
johnkerl
closed
1 month ago
2
[Bug][Python] Sparse array read with `result_order` is slow
#2687
bkmartinjr
opened
1 month ago
1
[Backport release-1.11] [r] Fix dependency of a test on fixed buffer sizes
#2686
github-actions[bot]
closed
1 month ago
0
[r] Fix dependency of a test on fixed buffer sizes
#2685
johnkerl
closed
1 month ago
14
[r] Examine dependency of `SOMAArrayReader-Iterated` test on buffer sizes
#2684
johnkerl
closed
1 month ago
0
[Backport release-1.11] [c++] Improve default buffer sizes
#2683
github-actions[bot]
closed
1 month ago
0
[c++] Improve default buffer size
#2682
johnkerl
closed
1 month ago
0
[c++] Improve default buffer sizes
#2681
johnkerl
closed
1 month ago
2
[ci] Reduce Mac resource requirements for pre-push/post-push
#2680
johnkerl
opened
1 month ago
1
[Backport release-1.11] [r] Set minimum version of Arrow to 15.0.1
#2679
github-actions[bot]
closed
1 month ago
0
[r] Set minimum version of Arrow to 15.0.1
#2678
mojaveazure
closed
1 month ago
0
Implement geometry array ABC class in `somacore`
#2677
johnkerl
opened
1 month ago
0
Pure Python prototype for geometries arrays
#2676
johnkerl
opened
1 month ago
0
[python] Move `SOMAGroup` to use C++ bindings
#2675
nguyenv
closed
1 month ago
2
[python] Replace `tiledb.Group` with `clib.SOMAGroup`
#2674
nguyenv
closed
4 weeks ago
0
[r] Seurat v5 prototype ingest/outgest
#2673
johnkerl
opened
1 month ago
0
TileDB-SOMA 1.12.0 release
#2672
johnkerl
closed
1 month ago
1
[r] Connect reindexer to blockwise iterator
#2671
johnkerl
closed
1 month ago
0
[r] tiledbsoma 1.11.4
#2670
johnkerl
closed
1 month ago
1
[Backport release-1.11] [python] Correctly handle string vs large string in `Enumeration`s
#2669
github-actions[bot]
closed
1 month ago
0
[python] Correctly handle string vs large string in `Enumeration`s
#2668
nguyenv
closed
1 month ago
1
Daily GitHub Actions Build Fail on Sat, June 1st 2024
#2667
github-actions[bot]
closed
1 month ago
1
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