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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
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[r] Use `libtiledbsoma` for dims/attrs accessors
#3058
johnkerl
opened
3 weeks ago
0
[r] Use libtiledbsoma for schema evolution
#3057
johnkerl
closed
2 weeks ago
1
[r] Use `libtiledbsoma` for schema/filter specification
#3056
johnkerl
opened
3 weeks ago
0
[r] Use `libtiledbsoma` for all `tiledb::schema` callsites
#3055
johnkerl
opened
3 weeks ago
2
[r] Remove the unused `fragment_count` accessor
#3054
johnkerl
closed
3 weeks ago
0
[python/c++] The `read` method does an `open` on an already open array
#3053
johnkerl
opened
3 weeks ago
0
[r] Remove all references to tiledb-r context
#3052
johnkerl
opened
3 weeks ago
0
[r] Port the query-condition logic from TileDB-R to TileDB-SOMA-R
#3051
johnkerl
closed
2 days ago
0
[r] Remove the unused `fragment_count` accessor
#3050
johnkerl
closed
3 weeks ago
0
[Bug] MemoryError when trying create anndata object from query
#3049
loguille
opened
3 weeks ago
2
[r] Run `clang-format` on `apis/r/src` (except autogen code)
#3048
johnkerl
closed
3 weeks ago
1
[python] Add `pytest` cases for spatial
#3047
johnkerl
opened
3 weeks ago
0
Add unit-test cases for point clouds
#3046
johnkerl
closed
1 day ago
0
[spatial] Add spatial format version and parser
#3045
johnkerl
closed
3 days ago
0
[spatial] Refactor `Collection` and `Group` to support non-collection groups
#3044
johnkerl
closed
3 days ago
1
[spatial] Add spatial slots to `Experiment` on `main` branch
#3043
johnkerl
closed
3 days ago
0
[spatial] Add spatial slot to `Measurement` on `main` branch
#3042
johnkerl
closed
3 days ago
0
[spatial] Add scene queries to `ExperimentAxisQuery` on `main` branch
#3041
johnkerl
opened
3 weeks ago
0
[spatial] Add `Scene` collection to `main`
#3040
johnkerl
closed
3 days ago
0
[spatial] Outline updates to the SOMA markdown specification
#3039
johnkerl
opened
3 weeks ago
0
[spatial] Add spatial slots to `Experiment`
#3038
johnkerl
closed
3 days ago
0
[spatial] Create `Scene` ABC in `somacore`
#3037
johnkerl
closed
3 days ago
0
[spatial] Add spatial slots to `Measurement`
#3036
johnkerl
closed
3 days ago
0
[python] Use `somacore` 1.0.16
#3035
johnkerl
closed
3 weeks ago
3
[python] Add `--maxfail=50` to GHA `pytest` invocations
#3034
ryan-williams
closed
3 weeks ago
1
[python] Drop extra index array schema name
#3033
jp-dark
closed
3 weeks ago
1
[r] Implement missing `domain` argument to `DataFrame` `create`
#3032
johnkerl
closed
2 weeks ago
3
[python] Parallelize `pybind11` build [RFC]
#3031
johnkerl
opened
3 weeks ago
1
[c++] Fix memory-management issues in new domainish helpers
#3030
johnkerl
closed
3 weeks ago
1
[c++] Fix a `valgrind` issue in unit-test code
#3029
johnkerl
closed
3 weeks ago
1
[c++] Improve current-domain signaling for string dims
#3028
johnkerl
closed
3 weeks ago
1
[python/r] Use pushdown domainish accessors at the Python/R UX level
#3027
johnkerl
closed
3 weeks ago
1
[python] One more rename in prep for domainish pushdown
#3026
johnkerl
closed
4 weeks ago
2
[c++] Fix bad merge from #3012 and #3020
#3025
johnkerl
closed
4 weeks ago
1
[python] Create `Group` base class for `Collection`
#3024
jp-dark
closed
3 weeks ago
2
[python] Create Group base class for Collection
#3023
jp-dark
closed
2 weeks ago
0
[python] Update names/methods to match somacore
#3022
jp-dark
closed
3 weeks ago
1
[python] Drop support for Python 3.8
#3021
ryan-williams
closed
3 weeks ago
1
[c++] Be a bit more careful testing dim-max vs shape
#3020
johnkerl
closed
4 weeks ago
1
[c++] Have a `DataFrame` test case with `soma_joinid` not first
#3019
johnkerl
closed
4 weeks ago
1
[c++] Readback-testing pieces for polytype domainish accessors
#3018
johnkerl
closed
4 weeks ago
0
[c++] Update dataframe unit-test writes in prep for polytype domainish accessors
#3017
johnkerl
closed
4 weeks ago
1
[r] TileDB-SOMA 1.14.1
#3016
johnkerl
closed
1 month ago
1
[r] TileDB-SOMA 1.14.1
#3015
johnkerl
closed
1 month ago
1
[python] Fix deprecation warnings [`main`]
#3014
johnkerl
closed
1 month ago
1
[python] Fix deprecation warnings [`release-1.14`]
#3013
johnkerl
closed
1 month ago
1
[c++] Implementation and unit testing for domainish accessors
#3012
johnkerl
closed
4 weeks ago
1
[c++] Pre-neatens for polymorphic domainish accessors
#3011
johnkerl
closed
1 month ago
1
[r] 1.14 version for `release-1.14` branch
#3010
johnkerl
closed
1 month ago
0
[r] Post-1.14 version for `main` branch
#3009
johnkerl
closed
1 month ago
0
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