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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
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[r] [WIP] Add support for reading v5 assays from an axis query
#3008
mojaveazure
opened
1 month ago
0
[r] Add `axis` checks when initializing a sparse blockwise read
#3007
mojaveazure
closed
1 month ago
0
[r] Remove core version check
#3006
johnkerl
closed
1 month ago
2
[python] Move temporary feature flag into a module
#3005
johnkerl
closed
1 month ago
2
[python] Remove `pyarrow` pin on MacOS
#3004
johnkerl
closed
1 month ago
4
[c++/r] Fix `pkgdown` build errors
#3003
johnkerl
closed
1 month ago
1
[c++] Use core 2.26.1
#3002
johnkerl
closed
1 month ago
0
[python] Python 3.12 support
#3001
johnkerl
opened
1 month ago
6
[python] Post-deprecation removal of `consolidate_and_vacuum` from `TileDBCreateOptions`
#3000
johnkerl
closed
1 month ago
1
TileDB-SOMA 1.14
#2999
johnkerl
closed
1 month ago
2
[python/r] Update ETA for new-shape feature and tiledb-py removal
#2998
johnkerl
closed
1 month ago
1
[r,c++] Use SOMA Context object throughout
#2997
eddelbuettel
closed
1 month ago
0
[r] Documentation refresher
#2996
eddelbuettel
closed
1 month ago
0
[c++] Push polymorphic domain-ish accessors down to C++
#2995
johnkerl
closed
4 weeks ago
1
[c++] Centralize some `nanoarrow` helpers
#2994
johnkerl
closed
1 month ago
2
[c++] Remap indexes even if no new enums were added
#2993
nguyenv
closed
1 month ago
1
[c++] Move `cast_bit_to_uint8` into `util`
#2992
nguyenv
closed
1 month ago
1
[r] Lower some logging from 'info' to 'debug'
#2991
eddelbuettel
closed
1 month ago
0
[c++] Fix bug in `nnz` of variant-indexed dataframes
#2990
johnkerl
closed
4 weeks ago
2
[c++] Fix `ManagedQuery` usage in `SOMAArray` write path
#2989
nguyenv
closed
1 month ago
2
[r] Use cached SOMA context rather than re-creating
#2988
mojaveazure
closed
1 month ago
1
Update the spatial branch to match changes to somacore
#2987
jp-dark
closed
1 month ago
1
[python] Use `somacore` 1.0.15
#2986
johnkerl
closed
1 month ago
1
[c++] Experimental [WIP]
#2985
johnkerl
closed
1 month ago
1
[python] Complete TileDB-Py 0.32.0 pin
#2984
johnkerl
closed
1 month ago
1
[c++] Support writes when attaching `Query` to `ColumnBuffer`
#2983
nguyenv
closed
1 month ago
1
[c++] Create specialized templates for `SOMAArray` casting functions
#2982
nguyenv
closed
1 month ago
1
Add spatial read support
#2981
jp-dark
closed
1 month ago
2
[c++/python] More exception-mapping fixes
#2980
johnkerl
closed
1 month ago
1
[c++] Remove `ArrayBuffers` from `SOMAArray`
#2979
nguyenv
closed
1 month ago
1
[c++] Refine concurrency configuration (`soma.compute_concurrency_level`)
#2978
bkmartinjr
closed
1 month ago
1
[c++] Deconfuse a test name
#2977
johnkerl
closed
1 month ago
1
Use core 2.26.0
#2976
johnkerl
closed
1 month ago
2
[c++] Fix `ManagedQuery` usage in `SOMAArray` write path
#2975
nguyenv
closed
1 month ago
2
[r] Correct a test expression
#2974
eddelbuettel
closed
1 month ago
3
[r] Updated groups read/write support via libtiledbsoma
#2973
eddelbuettel
closed
1 month ago
0
[c++] Support option to set log level from environment
#2972
johnkerl
closed
1 month ago
6
[r/ci] Fix bug when installing tiledb-r
#2971
mojaveazure
closed
1 month ago
0
[r] Fix `DenseNDArray` write after create
#2970
johnkerl
closed
1 month ago
1
[python] Minor name-neaten in internals for `domain`/`maxdomain`
#2969
johnkerl
closed
1 month ago
1
[python] Trivial dead-strip
#2968
johnkerl
closed
1 month ago
2
[r] `SOMADataFrame` `create` needs to accept a `domain` argument
#2967
johnkerl
closed
2 weeks ago
0
[r] `SparseNDArray`/`DenseNDArray` `create` methods need to accept tile extent from `PlatformConfig`
#2966
johnkerl
opened
1 month ago
0
[r] Fix bug in blockwise iterator
#2965
mojaveazure
closed
1 month ago
0
[python] New-shape testing for `tiledbsoma.io` [WIP]
#2964
johnkerl
closed
1 week ago
2
[python] Fix nightly-build failure / `pybind11` exception-mapping
#2963
johnkerl
closed
1 month ago
1
[python/r] Array-creation mods for new shape
#2962
johnkerl
closed
1 month ago
6
[Bug] Test failures from `test_shape.py` with libtiledb 2.26
#2961
jdblischak
closed
1 month ago
1
Add tracking links for dense/new-shape support
#2960
johnkerl
closed
1 month ago
1
Small updates to spatial branch
#2959
jp-dark
closed
1 month ago
1
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