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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
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[python] Expose tiledbsoma stats as JSON string or Python-parsed
#2958
johnkerl
closed
1 month ago
1
[c++/python] Map core-to-soma domains correctly
#2957
johnkerl
closed
1 month ago
2
[c++] Also check for leading slash when checking for 'relative' URLs
#2956
eddelbuettel
closed
1 month ago
3
[c++/python/r] New-shape support for `DenseNDArray`
#2955
johnkerl
opened
1 month ago
0
[python] Drop extra index array schema name
#2954
jp-dark
closed
3 weeks ago
3
[python/r] Expose shape-related accessors to Python/R bindings
#2953
johnkerl
closed
1 month ago
3
[python/r] Temporary feature-flags for stacked PRs [WIP]
#2952
johnkerl
closed
1 month ago
2
[c++] Clarify dataframe-shaping test/access points
#2951
johnkerl
closed
1 month ago
1
[python/r] Implement `resize` and `tiledbsoma_upgrade_shape`
#2950
johnkerl
closed
1 month ago
3
[python] Drop support for Python 3.8
#2949
kounelisagis
closed
3 weeks ago
7
[c++] Implement `upgrade_shape` for `SparseNDArray` and `DenseNDArray`
#2948
johnkerl
closed
1 month ago
1
[c++] Unit-test `resize` for `SparseNDArray` and `DenseNDArray`
#2947
johnkerl
closed
1 month ago
0
Replace `Image2DCollection` with `MultiscaleImage` in Python and C++
#2946
jp-dark
closed
1 month ago
1
[c++] Make a Catch2 test fixture for dataframes
#2945
johnkerl
closed
1 month ago
2
[c++] Unit-test variant-indexed dataframes
#2944
johnkerl
closed
1 month ago
1
Move CoordinateSpace and CoordinateTransform to SOMA
#2943
jp-dark
closed
1 month ago
1
[python] Fix ref to method in docstring example
#2942
spencerseale
closed
1 month ago
2
[c++] Reduce deprecation-warning lines in CI build logs
#2941
johnkerl
opened
1 month ago
1
[c++] Test core PR 5260 [WIP] [skip ci]
#2940
johnkerl
opened
1 month ago
0
[c++] Parameterize schema-creation unit-test helpers
#2939
johnkerl
closed
1 month ago
2
[c++] More `use_current_domain` unit-test parameterization
#2938
johnkerl
closed
1 month ago
1
[python] Verify make-clean interaction with `pip install -e apis/python`
#2937
johnkerl
opened
1 month ago
3
[c++] Pre-neatens before making unit-test helpers for variant-indexed dataframes
#2936
johnkerl
closed
1 month ago
2
Remove `_soma_geometry` field
#2935
jp-dark
closed
1 month ago
1
[python] Support NumPy 2
#2934
johnkerl
closed
3 days ago
4
Fix notebook name typo
#2933
ryan-williams
closed
1 month ago
2
[r] Signal script failure to calling script, polish messages
#2932
eddelbuettel
closed
1 month ago
1
[Bug]Can't install tiledb-soma R package [bug]
#2931
woodyNsinbad
closed
1 month ago
8
[r] Use cached timestamp in `$create()` and `$write()`
#2930
mojaveazure
closed
1 month ago
0
[r] Expose timestamp ranges for libtiledbsoma
#2929
mojaveazure
closed
1 month ago
0
[c++/python] Memory leak in Python sparse-array write
#2928
johnkerl
closed
4 weeks ago
1
shellcheck `scripts/bld`
#2927
ryan-williams
closed
1 month ago
2
[r] Timestamp write and read of data frame and array objects
#2926
eddelbuettel
closed
1 month ago
3
[r] Expose timestamp ranges for libtiledbsoma
#2925
mojaveazure
closed
1 month ago
1
Add PointCloud class and use in Visium ingestor
#2924
jp-dark
closed
1 month ago
1
[c++,r] Update vendored `nanoarrow` to release 0.5.0
#2923
eddelbuettel
closed
1 month ago
1
[R] Move failing R CI workflow to daily cron
#2922
ryan-williams
closed
1 month ago
4
[c++] Revert #2895
#2921
ryan-williams
closed
1 month ago
2
[Bug] `cellxgene_census_builder//test_builder.py` failing
#2920
ryan-williams
opened
1 month ago
3
[c++] Minor function-extract in a unit-test helper
#2919
johnkerl
closed
1 month ago
2
[c++] Remove some dead unit-test code
#2918
johnkerl
closed
2 months ago
1
[c++] Resize for variant-indexed `DataFrame`
#2917
johnkerl
closed
1 month ago
1
[c++] Performant `DataFrame.shape`
#2916
johnkerl
closed
1 month ago
1
[c++] Remove some dead code in int64-only shape accessor
#2915
johnkerl
closed
1 month ago
2
[r] Small robustification for version comparison
#2914
eddelbuettel
closed
2 months ago
0
[c++] Trivial name-neaten
#2913
johnkerl
closed
2 months ago
1
[c++] Fix typo in `test/unit_soma_dense_ndarray.cc` [WIP]
#2912
johnkerl
opened
2 months ago
0
[c++] Arrow utils with current-domain option
#2911
johnkerl
closed
1 month ago
3
[c++] Trivial parameterizes in `test/common.cc`
#2910
johnkerl
closed
2 months ago
1
[c++] Methodize timestamped-schema-evolution factory
#2909
johnkerl
closed
2 months ago
1
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