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single-cell-data
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TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
https://tiledbsoma.readthedocs.io
MIT License
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[python] Trivial rename within a unit-test file
#2908
johnkerl
closed
2 months ago
0
Small adjustments to the spatial branch
#2907
jp-dark
closed
2 months ago
1
[Bug] R CI flaky
#2906
ryan-williams
opened
2 months ago
6
[Backport release-1.13] [python] Use `somacore` 1.0.14
#2905
github-actions[bot]
closed
2 months ago
1
[r] TileDB-SOMA 1.13.1
#2904
johnkerl
closed
2 months ago
0
[Backport release-1.13] [c++] Corner-case bug in extend-enumeration logic
#2903
github-actions[bot]
closed
2 months ago
0
[Backport release-1.13] [c++] Final update for Python/R metadata typing
#2902
github-actions[bot]
closed
2 months ago
0
[Backport release-1.13] [c++] Apply `ArraySchemaEvolution` to specified timestamp
#2901
github-actions[bot]
closed
2 months ago
0
[c++] Final update for Python/R metadata typing
#2900
johnkerl
closed
2 months ago
1
[Bug] R `SOMACollection` printer doesn't get context
#2899
ebezzi
closed
4 weeks ago
3
[python] Unit-test helper `make_df` -> `make_pd_df`
#2898
johnkerl
closed
2 months ago
1
[c++] Corner-case bug in extend-enumeration logic
#2897
johnkerl
closed
2 months ago
1
[c++] Corner-case bug in extend-enumeration logic
#2896
johnkerl
closed
1 week ago
1
[c++] Apply `ArraySchemaEvolution` to specified timestamp
#2895
johnkerl
closed
2 months ago
12
[Backport release-1.13] [c++] Remove a temporary `gdb` hook from #2888
#2894
github-actions[bot]
closed
2 months ago
0
[ci] Update autocut rule for current ownership
#2893
johnkerl
closed
2 months ago
0
[python] Docstring typo, test-assertion msgs, `maybe_raises` improvement, `verify_logs` helper
#2892
ryan-williams
closed
2 months ago
1
[c++] Remove a temporary `gdb` hook from #2888
#2891
johnkerl
closed
2 months ago
1
Daily GitHub Actions Build Fail on Wed, August 14th 2024
#2890
github-actions[bot]
closed
2 months ago
1
[Backport release-1.13] [c++] Fix typos in unit-test case
#2889
github-actions[bot]
closed
2 months ago
0
[c++] Fix typos in unit-test case
#2888
johnkerl
closed
2 months ago
4
[python] Remove some dead code
#2887
johnkerl
closed
2 months ago
1
[Backport release-1.13] [c++] Add `dataset_type` into `SOMAExperiment` metadata
#2886
github-actions[bot]
closed
2 months ago
0
[python/r] Adding/checking `dataset_type=soma` in SOMA Experiment metadata
#2885
johnkerl
opened
2 months ago
2
[c++] Add `dataset_type` into `SOMAExperiment` metadata
#2884
nguyenv
closed
2 months ago
3
[python] Remove tiledb-py from unit tests
#2883
nguyenv
closed
3 days ago
5
[python] Add `VFS` binding in `pybind11`
#2882
nguyenv
closed
3 days ago
3
[Bug] Allows write of column names with `.` but breaks on read
#2881
srdsam
closed
2 months ago
2
Prototype coordinate space registration
#2880
jp-dark
closed
1 month ago
2
[c++] Dictionary columns do not read back correctly when passed `timestamp`
#2879
nguyenv
opened
2 months ago
4
[python] Use `somacore` 1.0.14
#2878
johnkerl
closed
2 months ago
1
[Backport release-1.13] [python] Fix a comment
#2877
github-actions[bot]
closed
2 months ago
0
[python] `update_uns_by_uri`, `_update_uns`
#2876
ryan-williams
closed
1 month ago
3
[python] Fix a comment
#2875
johnkerl
closed
2 months ago
1
[python] improve `uns` DataFrame I/O
#2874
ryan-williams
closed
2 months ago
2
[python] Update comments, remove unused test params
#2873
ryan-williams
closed
2 months ago
1
[python] More AnnData equality assertions in tests
#2872
ryan-williams
closed
2 months ago
1
[r] Expose timestamps publicly and plumb through for resume-mode
#2871
mojaveazure
closed
2 months ago
0
[Backport release-1.13] `python` Utilize Arrow schema `pa.field` nullabilities in `DataFrame.create`
#2870
github-actions[bot]
closed
2 months ago
0
[python] Utilize Arrow schema `pa.field` nullabilities in `DataFrame.create`
#2869
johnkerl
closed
2 months ago
0
[python] Utilize Arrow schema `pa.field` nullabilities in `DataFrame.create`
#2868
johnkerl
closed
2 months ago
1
[Bug] Illegal instruction despite building from source
#2867
chrish935
opened
2 months ago
39
[r] Expose `tiledb_timestamp` parameter to `$reopen()`
#2866
mojaveazure
closed
2 months ago
3
[Backport release-1.13] [python] Offer better guidance on attribute names with `.`
#2865
github-actions[bot]
closed
2 months ago
0
[python] Offer better guidance on attribute names with `.`
#2864
johnkerl
closed
2 months ago
1
Daily GitHub Actions Build Fail on Fri, August 9th 2024
#2863
github-actions[bot]
closed
2 months ago
1
[python] Move `_update_column` into pybind11
#2862
nguyenv
closed
2 months ago
1
[python] TileDB-SOMA-Py should map `None`, `pd.NA`, and `math.nan` in string columns to null values
#2861
johnkerl
opened
2 months ago
0
[python] TileDB-SOMA-Py can do better null-filtering with implicit Pandas DataFrame categories
#2860
johnkerl
opened
2 months ago
0
[python] TileDB does not allow `""` as the sole string-enum value
#2859
johnkerl
opened
2 months ago
1
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