singleron-RD CeleScope issues

singleron-RD / CeleScope

Single Cell Analysis Pipelines

https://www.singleron.bio/

MIT License

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issues

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EXITING because of FATAL ERROR in reads input: quality string length is not equal to sequence length

#294 zenith90210 opened 4 days ago
1
OpenBLAS warning: precompiled NUM_THREADS exceeded, adding auxiliary array for thread metadata.

#293 haikunhu opened 1 week ago
5
BCR Analysis with multi_vdj_full_len Failing at Step 03.assemble

#292 GGN1999 opened 1 month ago
5
numpy.dtype size changed

#291 biobirds9 opened 3 months ago
4
Bump scikit-learn from 1.2.2 to 1.5.0

#290 dependabot[bot] closed 3 weeks ago
1
FileNotFoundError: Did not find file SMA/outs/filtered/matrix.mtx.gz.

#289 2124sa opened 3 months ago
1
Multiple errors trying to analyze flv_trust4 data

#288 panapapa14 opened 4 months ago
5
featureCounts subprocess.CalledProcessError

#287 CaiCheng1996 opened 4 months ago
1
update --STAR_param parsing method

#286 pigraul closed 4 months ago
0
IndexError: sequence length is not enough in R1 read

#285 calcaidecabello opened 4 months ago
7
Problem with mkref

#284 calcaidecabello closed 4 months ago
0
1.12.0 can be installed, but failed to be run.

#281 CaiCheng1996 closed 5 months ago
3
celescope rna mkref but no folder output

#280 CaiCheng1996 closed 5 months ago
2
Individual steps are not working.

#279 araboapresyan closed 5 months ago
4
Celescope needs an improved documentation/manual

#278 wendelljpereira opened 6 months ago
3
Auto Chemistry Detection Failing and FIFO File Generation Problem

#277 Sandman-1 opened 6 months ago
7
BGI data was not suitable for version 2.0.7

#276 biozhao77 opened 7 months ago
7
Problem installing celescope, cannot build wheel for pysam

#275 elquinessyang opened 7 months ago
2
Splitting VDJ fails

#274 MarcElvld closed 7 months ago
3
Problem in running Celescope for RNA

#273 AndreaGhiroldi opened 7 months ago
4
Problem in mkref command

#272 AndreaGhiroldi opened 7 months ago
2
aggr function

#271 vagabond12 opened 8 months ago
1
No bclist found for chemistry scopeV1 under

#270 guijie2015 closed 10 months ago
2
Some ISSUEs concerning about constructing REFERENCE on vdj sequencing and full length immune receptor sequencing

#269 Gethell opened 11 months ago
6
bulk_rna

#268 pigraul closed 11 months ago
0
Dev

#267 pigraul closed 1 year ago
0
Subread and cutadapt working as Single-end reads BUT I have Paired end reads

#266 MohamedAbdalfatah opened 1 year ago
1
Instlation versions problem

#265 MohamedAbdalfatah opened 1 year ago
3
Lung panel gene list - KRAS

#264 WouterMidden closed 11 months ago
1
gtf file not found

#263 zhouyiqi91 closed 1 year ago
0
snp target_metrics FileNotFoundError(f'No file found for {pattern_list}')

#262 PhilippBanza opened 1 year ago
1
bulk vdj

#261 Chenjunjie1996 closed 1 year ago
0
bulk_vdj

#260 Chenjunjie1996 closed 1 year ago
0
bulk_vdj

#259 Chenjunjie1996 closed 1 year ago
0
add bulk_rna

#258 pigraul closed 1 year ago
0
dynaseq

#257 pigraul closed 1 year ago
0
bulk_vdj

#256 Chenjunjie1996 closed 1 year ago
0
tag

#255 Chenjunjie1996 closed 1 year ago
0
add bulk_vdj assay

#254 Chenjunjie1996 closed 1 year ago
0
dynaseq

#253 pigraul closed 1 year ago
0
update dynaseq assay

#252 pigraul closed 1 year ago
0
Chemistry Error with "Auto" parameter.

#251 hkarakurt8742 closed 1 year ago
2
about a strange error

#250 evenDDDDD opened 1 year ago
3
flv_CR

#249 Chenjunjie1996 closed 1 year ago
0
celescope vdj mapping_vdj CalledProcessError error

#248 liujiayu1997 opened 1 year ago
1
Running mulit_snp on focusscope data leads to error in later stages

#247 jaspitzer closed 1 year ago
5
flv

#246 Chenjunjie1996 closed 1 year ago
0
snp assay

#245 Chenjunjie1996 closed 1 year ago
0
flv_CR

#244 Chenjunjie1996 closed 1 year ago
0
flv_CR

#243 Chenjunjie1996 closed 1 year ago
0