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siolmsstate / brain_mri

An open brain MRI dataset and baseline evaluations for tumor recurrence prediction
MIT License
10 stars 3 forks source link

dataset link / citation #1

Open kirbyju opened 1 year ago

kirbyju commented 1 year ago

Hi, I work with the TCIA team that is hosting your dataset. In the README.md for the "TCIA Link" you are pointing to a URL that is going to stop working in the next couple of months (wiki.cancerimagingarchive.net). The DOI URL in your dataset citation will continue to work even after our migrate to our new data management system.

Wang, Y., Duggar, W.N., Caballero, D.M., Vengaloor Thomas, T., Adari, N., Mundra, E.K., Wang, H. (2023) Brain Tumor Recurrence Prediction after Gamma Knife Radiotherapy from MRI and Related DICOM-RT: An Open Annotated Dataset and Baseline Algorithm (Brain-TR-GammaKnife) [Dataset]. The Cancer Imaging Archive. DOI: https://doi.org/10.7937/xb6d-py67

Also, you might want to leverage https://github.com/kirbyju/TCIA_Notebooks/blob/main/TCIA_Linux_Data_Retriever_App.ipynb or https://github.com/kirbyju/TCIA_Notebooks/blob/main/TCIA_REST_API_Downloads.ipynb as a way to help people download the data without leaving the command line and verify that your code still works based on the way that the directories are named.

siolmsstate commented 1 year ago

Thank you for reaching out. We'll update these based on the feedback.