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siolmsstate / brain_mri

An open brain MRI dataset and baseline evaluations for tumor recurrence prediction
MIT License
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convolutional-neural-networks deep-learning medical-imaging

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BrainTR-GammaKnife

Brain Tumor Recurrence Prediction after Gamma Knife Radiotherapy from MRI and Related DICOM-RT: An Open Annotated Dataset and Baseline Algorithm

2023.11 Update: This work has been published in Scientific Data.

Paper Citation

Wang, Y., Duggar, W.N., Caballero, D.M. et al. A brain MRI dataset and baseline evaluations for tumor recurrence prediction after Gamma Knife radiotherapy. Sci Data 10, 785 (2023). https://doi.org/10.1038/s41597-023-02683-1

TCIA link

Wang, Y., Duggar, W.N., Caballero, D.M., Vengaloor Thomas, T., Adari, N., Mundra, E.K., Wang, H. (2023) Brain Tumor Recurrence Prediction after Gamma Knife Radiotherapy from MRI and Related DICOM-RT: An Open Annotated Dataset and Baseline Algorithm (Brain-TR-GammaKnife) [Dataset]. The Cancer Imaging Archive. DOI: https://doi.org/10.7937/xb6d-py67

TCIA Wiki Page

https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=145753093

Usage

Sample preprocessing steps

preprocessing.py

Model structure

model.py

Perform necessary data sampling

Start training

train.py

Citation

Dataset Citation

Wang, Y., Duggar, W.N., Caballero, D.M., Vengaloor Thomas, T., Adari, N., Mundra, E.K., Wang, H. (2023) Brain Tumor Recurrence Prediction after Gamma Knife Radiotherapy from MRI and Related DICOM-RT: An Open Annotated Dataset and Baseline Algorithm (Brain-TR-GammaKnife) [Dataset]. The Cancer Imaging Archive. DOI:  https://doi.org/10.7937/xb6d-py67

Paper Citation

Wang, Y., Duggar, W.N., Caballero, D.M. et al. A brain MRI dataset and baseline evaluations for tumor recurrence prediction after Gamma Knife radiotherapy. Sci Data 10, 785 (2023). https://doi.org/10.1038/s41597-023-02683-1

TCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013).  \\ The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057).  https://doi.org/10.1007/s10278-013-9622-7