sizespectrum mizer issues

sizespectrum / mizer

Multi-species size-based ecological modelling in R

https://sizespectrum.org/mizer

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issues

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Use `age_max` and `age_mat` in `plotGrowthCurves()`

#248 gustavdelius closed 1 year ago
2
Accept column names in interaction matrix

#247 gustavdelius closed 2 years ago
0
Release mizer 2.3.1

#246 gustavdelius closed 2 years ago
0
Let users set steady-state resource abundance and resource level

#245 gustavdelius closed 1 year ago
1
`setBevertonHolt()` does not respect `erepro` input

#244 patricksykes closed 2 years ago
8
Set initial effort to 1

#243 gustavdelius closed 2 years ago
3
Be careful when decreasing `w_min` or increasing `w_inf`

#242 gustavdelius opened 2 years ago
0
Allow for non-feeding larval stage

#241 gustavdelius opened 3 years ago
0
adding plot functions from tuneParams

#240 baldrech closed 3 years ago
2
renameGear()

#239 gustavdelius opened 3 years ago
0
In default for `gamma` take `interaction_resource` into account

#238 gustavdelius closed 2 years ago
0
Allow time-dependent rates

#237 gustavdelius opened 3 years ago
0
Add a callback function to `project()`

#236 gustavdelius opened 3 years ago
1
Use resource parameter names `w_min` and `w_max`

#235 gustavdelius opened 3 years ago
0
New function `registerExtension()`

#234 gustavdelius opened 3 years ago
0
Comparing quantities between mizer and stock-assessment models

#233 michaelspence opened 3 years ago
9
Drop the requirement that interaction matrix entries are between 0 and 1

#232 gustavdelius closed 2 years ago
3
Use `t_max` and `t_save` even when effort array is supplied to `project()`

#231 gustavdelius opened 3 years ago
0
`validEffortVector()` and `validEffortArray()` should not accept NAs

#230 gustavdelius closed 2 years ago
1
Metadata for MizerParams

#219 gustavdelius closed 3 years ago
0
Allow initial_effort to be specified via gear_params data frame

#218 gustavdelius closed 3 years ago
1
Include unobserved species in `plotBiomassObservedVsModel()`

#220 gustavdelius closed 3 years ago
4
Clean up use of `@A` and `@sc` slots

#217 gustavdelius opened 3 years ago
0
Improvements to `addSpecies()`

#216 gustavdelius closed 3 years ago
0
Check for all functions that documentation and tests agree

#215 gustavdelius opened 3 years ago
0
Change behaviour of `comment` argument of setter functions

#214 gustavdelius closed 3 years ago
1
Alternative syntax for accessing and changing MizerParams slots

#213 gustavdelius closed 3 years ago
1
Make accessing and changing individual species and gear parameters easier

#212 gustavdelius closed 3 years ago
1
Better tests for extension mechanism

#211 gustavdelius opened 3 years ago
0
Preserve reproduction parameters during tuning

#210 gustavdelius closed 3 years ago
0
Framework for informing users about defaults

#209 gustavdelius closed 3 years ago
0
Preserve reproduction parameters during tuning.

#208 gustavdelius closed 3 years ago
2
Better initial state for multispecies model

#207 gustavdelius opened 3 years ago
0
Dependence on `t_per` in `steady()`

#206 gustavdelius opened 3 years ago
0
Improvements to `compareParams()`

#205 gustavdelius opened 3 years ago
0
Adding plots for comparing model and observed biomasses...

#221 SamikDatta closed 3 years ago
8
`animateSpectra()` should use same line colours as other plots

#204 gustavdelius opened 3 years ago
1
Legends in plots show only included species

#203 gustavdelius closed 3 years ago
1
Species names should always be strings

#202 gustavdelius closed 3 years ago
0
`plotGrowthCurves()` should preserve order of species

#201 gustavdelius closed 3 years ago
3
`getYield()` should work also when given a MizerParams object

#200 gustavdelius closed 3 years ago
1
System for informing users about defaults

#199 gustavdelius closed 3 years ago
0
Should default values be stored in species_params?

#198 gustavdelius opened 3 years ago
6
Legend in plots should show only those components that are included in plot

#197 gustavdelius closed 3 years ago
0
Make `plotDiet()` more similar to other plotting functions

#196 gustavdelius opened 3 years ago
0
`initialN()` should also work on MizerSim object

#195 gustavdelius closed 3 years ago
0
New way to visually compare two plots

#194 gustavdelius opened 3 years ago
1
Update start of multispecies model vignette

#193 gustavdelius closed 3 years ago
1
return_data argument

#191 baldrech closed 3 years ago
1
Proposal: a unified treatment of the extrinsic density dependencies

#190 gustavdelius opened 3 years ago
0

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