issues
search
smithlabcode
/
dnmtools
Tools for analyzing DNA methylation data
https://dnmtools.readthedocs.io
GNU General Public License v3.0
30
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
bgzf input format for dmr
#203
andrewdavidsmith
closed
11 months ago
0
xcounts header
#202
andrewdavidsmith
closed
11 months ago
0
Max buffer size argument for uniq
#201
andrewdavidsmith
closed
11 months ago
0
compress counts
#200
andrewdavidsmith
closed
11 months ago
0
covered compression mode
#199
andrewdavidsmith
closed
11 months ago
0
Using threads in sym
#198
andrewdavidsmith
closed
11 months ago
0
Sym from incomplete counts file
#197
andrewdavidsmith
closed
11 months ago
0
Counts bugfix when covered not required
#196
andrewdavidsmith
closed
11 months ago
0
BED file summary now in 64 bit
#195
andrewdavidsmith
closed
11 months ago
0
covered output to stdout
#194
andrewdavidsmith
closed
11 months ago
0
Optimizing covered
#193
andrewdavidsmith
closed
12 months ago
0
recovered command bug fix
#192
andrewdavidsmith
closed
12 months ago
0
bad count line
#191
masarunakajima
closed
12 months ago
1
Remove or add back non-covered sites from compressed counts files
#190
andrewdavidsmith
closed
12 months ago
0
amrfinder: ensuring the block bounds are set without a possible infinite loop
#189
andrewdavidsmith
closed
12 months ago
0
amrfinder correct for read counts
#188
andrewdavidsmith
closed
12 months ago
0
roi regions must be regular file
#187
andrewdavidsmith
closed
12 months ago
0
fixed a bug in accumulating read lengths
#186
masarunakajima
closed
12 months ago
0
Sites track for CpGs and other kmers
#185
andrewdavidsmith
closed
1 year ago
0
amrfinder summary when no amrs
#184
andrewdavidsmith
closed
1 year ago
0
Tabular format for merge gets first column header option
#183
andrewdavidsmith
closed
1 year ago
0
amrfinder no threaded io
#182
andrewdavidsmith
closed
1 year ago
0
Counts output covered sites only
#181
andrewdavidsmith
closed
1 year ago
0
Fixes #179. Checking that hmrs are found before attempting to get their scores
#180
andrewdavidsmith
closed
1 year ago
0
HMR crash when nothing identified
#179
andrewdavidsmith
closed
1 year ago
0
merge -t header seems to be not properly formatted
#178
moqri
closed
1 year ago
3
HMR exit success on insufficient data
#177
andrewdavidsmith
closed
1 year ago
0
HMRs summary on insufficient data
#176
andrewdavidsmith
closed
1 year ago
0
PMD write summary on error
#175
andrewdavidsmith
closed
1 year ago
0
uniform summary arguments
#174
andrewdavidsmith
closed
1 year ago
0
v142 prep
#173
andrewdavidsmith
closed
1 year ago
0
Third round of trying to silence compiler warnings before v1.4.2
#172
andrewdavidsmith
closed
1 year ago
0
Silencing warnings (round two)
#171
andrewdavidsmith
closed
1 year ago
0
silencing compiler warnings
#170
andrewdavidsmith
closed
1 year ago
0
format: max distance when merging mates seems ignored
#169
andrewdavidsmith
closed
1 year ago
0
A question for 'dnmtools allelic'
#168
ETC100
closed
7 months ago
2
updating submodules
#167
andrewdavidsmith
closed
1 year ago
0
amrfinder optimization
#166
andrewdavidsmith
closed
1 year ago
0
Fixes #164: initializing the verbose variable
#165
andrewdavidsmith
closed
1 year ago
0
-v flag opposite in guessprotocol
#164
masarunakajima
closed
1 year ago
0
Updating build config so that v1.4.1 will build on conda servers for macos
#163
andrewdavidsmith
closed
1 year ago
0
Updating submodules
#162
andrewdavidsmith
closed
1 year ago
0
v141 prep
#161
andrewdavidsmith
closed
1 year ago
0
guessprotocol: updating the docs for the new model and output format
#160
andrewdavidsmith
closed
1 year ago
0
Guessprotocol updates
#159
masarunakajima
closed
1 year ago
0
sym and states: gzip option
#158
andrewdavidsmith
closed
1 year ago
0
Fixes 156: pmd bug
#157
andrewdavidsmith
closed
1 year ago
0
pmd crash if insufficient data unless verbose mode used
#156
andrewdavidsmith
closed
1 year ago
1
roi docs
#155
andrewdavidsmith
closed
1 year ago
0
roi should check for input files before reporting any problems with arguments
#154
andrewdavidsmith
opened
1 year ago
0
Previous
Next