snakemake snakefmt issues

snakemake / snakefmt

The uncompromising Snakemake code formatter

MIT License

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Erroneous parsing of regex - mistaken for path

#244 cmeesters closed 1 month ago
2
Specifying conda directive within Snakefile (and even before imports) should be supported

#243 hermidalc closed 3 weeks ago
1
Comment in multi-line parenthesis breaks Black

#242 lczech opened 2 months ago
1
Line numbers are reported pre-formatting

#241 lczech opened 2 months ago
1
Long parenthesis within rule settings breaks code

#240 lczech opened 2 months ago
1
Else branch after conditional include breaks depending on subsequent code

#239 lczech opened 2 months ago
2
build(deps-dev): bump zipp from 3.18.1 to 3.19.1

#238 dependabot[bot] closed 2 months ago
0
build(deps-dev): bump certifi from 2024.2.2 to 2024.7.4

#237 dependabot[bot] closed 2 months ago
0
build(deps-dev): bump urllib3 from 2.2.1 to 2.2.2

#236 dependabot[bot] closed 2 months ago
0
build(deps-dev): bump requests from 2.31.0 to 2.32.0

#235 dependabot[bot] closed 3 months ago
0
docs: fix incorrect compare URL

#234 mbhall88 closed 3 months ago
0
chore: release 0.10.3

#233 github-actions[bot] opened 3 months ago
0
docs: update pre commit example

#232 jpwgnr closed 3 months ago
2
chore: release 0.10.2

#231 github-actions[bot] closed 4 months ago
1
fix: Better f-string spacing (2)

#230 bricoletc closed 4 months ago
0
build(deps-dev): bump jinja2 from 3.1.3 to 3.1.4

#229 dependabot[bot] closed 4 months ago
0
fix: Better f-string spacing

#228 bricoletc closed 4 months ago
2
Removal of whitespace in f-string when used with python 3.12 (not with python 3.11)

#227 corneliusroemer closed 4 months ago
2
chore: release 0.10.1

#226 github-actions[bot] closed 4 months ago
1
build(deps-dev): bump idna from 3.6 to 3.7

#225 dependabot[bot] closed 4 months ago
1
spaces added in f-strings

#224 jbloom closed 5 months ago
1
fix: spacing in consecutive braces in f-string

#223 mbhall88 closed 4 months ago
0
Spurious additional space added between adjacent replacement fields

#222 edbennett closed 4 months ago
2
build(deps): bump black from 24.1.1 to 24.3.0

#221 dependabot[bot] closed 5 months ago
1
Addition of unwanted whitespaces when a function is called within an expression section of an f-string

#220 enixmail closed 4 months ago
5
feat: update to black v24 and fix double curly braces (Updated PR #216)

#219 bricoletc closed 7 months ago
2
build(deps-dev): bump gitpython from 3.1.40 to 3.1.41

#218 dependabot[bot] closed 7 months ago
1
chore: release 0.10.0

#217 github-actions[bot] closed 7 months ago
2
feat: update to black v24 and fix double curly braces

#216 mbhall88 closed 7 months ago
6
Incorrectly removes double curly braces in f-string

#215 johanneskoester closed 7 months ago
2
build(deps-dev): bump jinja2 from 3.1.2 to 3.1.3

#214 dependabot[bot] closed 7 months ago
3
fix: support python3.12 f-string tokenizing

#213 mbhall88 closed 8 months ago
5
chore: release 0.9.0

#212 github-actions[bot] closed 8 months ago
4
chore: release 1.0.0

#211 github-actions[bot] closed 8 months ago
0
if-else expression under python3.12 cannot be formatted

#210 y9c closed 8 months ago
1
does not handle new global-level workflow dependencies

#209 jbloom opened 8 months ago
1
Misformatting of lambda functions in `threads:` (causing "Unexpected keyword wildcards in rule definition")

#208 karel-brinda opened 9 months ago
2
Bug: snakefmt erroneously removes double braces, {{x}} -> {x}

#207 corneliusroemer closed 8 months ago
7
chore: release 0.8.5

#206 github-actions[bot] closed 11 months ago
1
python 3.12: unable to format inconsistent use of tabs and spaces

#205 maarten-k closed 8 months ago
5
fix: make default exclude regex more specific [#202]

#204 mbhall88 closed 11 months ago
1
Empty `--include` is not treated as "match-all" in contrast to help-string

#203 corneliusroemer closed 11 months ago
1
snakefmt appears to require explicit inclusion of subdirectories

#202 corneliusroemer closed 11 months ago
4
Prevent newline for shell triple-quote

#201 alpha-beta-soup opened 11 months ago
1
build(deps-dev): bump gitpython from 3.1.31 to 3.1.32

#200 dependabot[bot] closed 8 months ago
2
build: use lighter poety-core

#199 branchvincent closed 1 year ago
1
build(deps-dev): bump certifi from 2022.12.7 to 2023.7.22

#198 dependabot[bot] closed 8 months ago
2
Intendeation in run directive breaking code - simple declarations

#197 gordonkoehn opened 1 year ago
2
Double Line Comment in Run Directive leads to `InvalidPython`

#196 gordonkoehn opened 1 year ago
1
Add CITATION file

#195 mbhall88 closed 1 year ago
3