Snakemake Language Support
Provides basic language support for Snakemake files (Snakefile, *.smk). Feedback, suggestions, and contributions are very welcome!
This project has been started by Peter Alping, and can be considered a fork of this repository.
Features
- Syntax definitions based on Python, with added Snakemake keywords
- Language rules based on Python
- Snippets
Example
Example taken from Snakemake documentation.
Supported Syntax
Keywords and Functions
- Configurations - configfile - include - localrules - onerror - onstart - onsuccess - ruleorder - snakefile - workdir - Rules - checkpoint - rule - subworkflow - Rule Parameters - benchmark - conda - cwl - group - input - log - message - output - params - priority - resources - run - script - shadow - shell - singularity - threads - version - wildcard_constraints - wrapper - Functions - ancient - directory - expand - pipe - protected - temp - touch - unpackTODO
- [ ] Indentation rules (really tricky for some reason)
- [ ] Recognize string substitutions:
"command {input}" - [ ] Recognize wildcard constraints inside string substitutions:
"{sample,[A-Za-z0-9]+}"