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snap-stanford
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GEARS
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
MIT License
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Very long import time
#34
dzyim
closed
10 months ago
1
traing stack using the v0.10.0 gears
#33
weizhiting
closed
10 months ago
5
Error when trying to load the pre-trained model
#32
moghra
closed
10 months ago
1
How many epochs should take when training the model using the Replogle K562 essential dataset.
#31
weizhiting
closed
10 months ago
1
Predictions: expression or delta expression?
#30
ekernf01
closed
11 months ago
2
no_test option for data split yields error
#29
ekernf01
closed
8 months ago
6
Question on data pre-processing
#28
cbirchsy
opened
11 months ago
8
A question about selecting genes
#27
HelloWorldLTY
closed
11 months ago
1
IndexError: index 0 is out of bounds for axis 0 with size 0
#26
taffy-miao
closed
12 months ago
5
Questions on pert_data.prepare_split
#25
taffy-miao
closed
12 months ago
2
Bug in new_data_process
#24
pckinnunen
closed
12 months ago
3
Please give some suggestions for fly scRNA-seq analysis?
#23
bitcometz
closed
10 months ago
1
problems with dataloader between versions
#22
AshirBorah
closed
1 year ago
2
Refactor
#21
yhr91
closed
1 year ago
0
ValueError: must produce aggregated value
#20
ekernf01
closed
1 year ago
2
Train/Test GEARS on One Gene Perturbation
#19
znavidi
closed
8 months ago
5
Problem in loading a subset of Dixit dataset
#18
znavidi
closed
1 year ago
3
Add support for perturbation magnitude/direction
#17
giladmishne
opened
1 year ago
0
split questions
#16
wconnell
closed
1 year ago
1
Fix error message for bad input in GEARS.predict()
#15
ekernf01
closed
1 year ago
1
Minimal example of data loading fails
#14
ekernf01
closed
8 months ago
4
Inference of a new gene
#13
ShahrzadH
closed
1 year ago
2
Support for combinations of gene activation and repression
#12
giladmishne
closed
1 year ago
4
More than 2 perturbations per cell in training data
#11
krejciadam
closed
1 year ago
3
Question: GO-network(s) with hierarchy separation?
#10
JulianRein
closed
1 year ago
3
RuntimeError: a leaf Variable that requires grad is being used in an in-place operation
#9
abedkurdi
closed
1 year ago
1
Question about installation
#8
abedkurdi
closed
1 year ago
1
Questions about the implementation
#7
chocolate9624
closed
1 year ago
1
A question about the condition columns in adata.obs
#6
CocoGzh
closed
1 year ago
1
Reproduce figure 2 b-g
#5
subercui
closed
9 months ago
23
Demo notebook raises gradient error for torch 1.12
#4
subercui
closed
1 year ago
3
black formatting
#3
gregjohnso
closed
2 years ago
0
Install instructions
#2
gregjohnso
closed
2 years ago
0
Create LICENSE
#1
kexinhuang12345
closed
2 years ago
0
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