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snap-stanford / SATURN

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Where is the extract.py file used in protein embedding? #27

Closed vinettey closed 11 months ago

vinettey commented 11 months ago

Hi! I was trying to following the Generate Protein Embeddings.ipynb tutorial but I couldn't find the extract.py file at the step of Run ESM. Where is this file located in the repo? Thank you!

Yanay1 commented 11 months ago

It's in a specific commit to the ESM repo (not the latest version):

https://github.com/facebookresearch/esm/tree/839c5b82c6cd9e18baa7a88dcbed3bd4b6d48e47

https://github.com/facebookresearch/esm/tree/839c5b82c6cd9e18baa7a88dcbed3bd4b6d48e47/scripts

bitcometz commented 8 months ago

thanks ！！！