Closed zhuojiuqingyun closed 3 weeks ago
Please double check and make sure the path is correct:
FileNotFoundError: [Errno 2] No such file or directory: 'data/xenia.proteins.gene_symbol_to_protein_ID.json'
The error is due to no file existing at that location.
Please double check and make sure the path is correct:
FileNotFoundError: [Errno 2] No such file or directory: 'data/xenia.proteins.gene_symbol_to_protein_ID.json'
The error is due to no file existing at that location.
Thanks for your reply.
In fact, it's this error which led to data/xenia.proteins.gene_symbol_to_protein_ID.json not being generated.
TypeError: descriptor 'union' of 'set' object needs an argument
I think the reason is that I couldn't find the protein fasta from ensembl, so I downloaded from NCBI. So my protein fasta description doesn't contain gene symbol and protein id ,which caused the error above.
How can I generate protein embedding from protein fasta not downloaded from Ensembl? Could you give me some instructions?
Thanks a lot!
Ruijie
Dear authors, Thank you very much for making this great tool. I got the following error while running Generate Protein Embeddings.ipynb using my protein fasta.
I didn't encounter this error when I running the example Xenopus_tropicalis. Could you help me with my issue?
Yours sincerely. Ruijie