Allow normalization to arbitrary number of genomes

snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.

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Closed snystrom closed 3 years ago

snystrom commented 4 years ago

Convert pipeline to use bbsplit?

Take refgenome parameter and spikegenome parameter, where spikegenome is a list of genome codes. Use this to lookup target genome in rule definition.

snystrom commented 3 years ago

Closed by 170ab9a91ea510b382e2cd4141df216413681c21