Use IDR for pooled peak assessment

snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.

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Closed snystrom closed 3 years ago

snystrom commented 4 years ago

Apparently it doesn't work on >2 replicates??? https://github.com/nboley/idr/issues/35

snystrom commented 3 years ago

Genrich peak caller does IDR-like behavior, worth looking into this caller as well.