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snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
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Environment Modules (new snakemake version feature) #22

Open snystrom opened 4 years ago

snystrom commented 4 years ago

Can now abstract out module purge && module load {pkgs}

Docs

snystrom commented 3 years ago

run rules do not support this behavior. Need to think about fix.

Possibly use if-else logic to append the module load calls to the run command? ie if envmodules is set append?

See #40