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snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
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Set `readLen` in sample-specific way #25

Open snystrom opened 4 years ago

snystrom commented 4 years ago

Samples can be from different sequencing runs and therefore need different read length adjustments during RPGC calculations, etc.

Use readLen column of sampleInfo to have sample-specific readLen set.

remove readLen setting from config.json