Spike-in using combined genome

snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.

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Closed snystrom closed 3 years ago

snystrom commented 3 years ago

for spike-in DNA have optional path where alignment happens on combined genome, goes through MapQ filter, dup removal, then split reads.

snystrom commented 3 years ago

Closed in 170ab9a91ea510b382e2cd4141df216413681c21