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snystrom / cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
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noYUHet #4

Closed snystrom closed 4 years ago

snystrom commented 5 years ago

Pipeline currently doesn't remove chrY, chrU, and Heterochromatin from dm3 aligned files.