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soorajachar / plateypus

Processes and plots high throughput cytometry experiments through a GUI
GNU General Public License v3.0
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Minor bug: openpyxl is not installed automatically with plateypus installation #4

Closed emanuelsc87 closed 3 years ago

emanuelsc87 commented 3 years ago

Just reporting this for other users that don't have much experience with command line. Problem easily solved by doing pip install openpyxl

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/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/initialDataProcessing.py:295: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison if 'Blank' in tempLevelValues: Exception in Tkinter callback Traceback (most recent call last): File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/tkinter/init.py", line 1892, in call return self.func(*args) File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/dataProcessingGUI.py", line 57, in cellDfButton = tk.Button(mainWindow,text='Create dataframe',command=lambda: createDataFrame('cell')) File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/dataProcessingGUI.py", line 46, in createDataFrame dataProcessingMaster(folderName,expNum,dataType,ex_data,v3.get()) File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/dataProcessingGUI.py", line 126, in dataProcessingMaster idp.saveFinalDataFrames(folderName,secondPath,expNum,dataType,celldf,ex_data) File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/initialDataProcessing.py", line 329, in saveFinalDataFrames convertDataFramesToExcel(folderName,secondPath,dataType,fullExperimentDf) File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/plateypus/dataprocessing/initialDataProcessing.py", line 312, in convertDataFramesToExcel writer = pd.ExcelWriter('outputData/excelFiles/excelFile-'+folderName+'-'+dataType+'.xlsx') File "/Users/salazarcavazoe2/anaconda3/envs/py38/lib/python3.8/site-packages/pandas/io/excel/_openpyxl.py", line 30, in init from openpyxl.workbook import Workbook ModuleNotFoundError: No module named 'openpyxl'

soorajachar commented 3 years ago

Fixed in plateypus 0.1.17; openpyxl and tables (for hdf5 file saving), which are optional pandas dependencies, have been added to required plateypus dependencies