Use of characters in layout: not OK?

[Immunodynamics]

Exception in Tkinter callback Traceback (most recent call last): File "/opt/anaconda3/lib/python3.8/tkinter/init.py", line 1883, in call return self.func(*args) File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 980, in tk.Button(selectionWindow, text="Deselect Wells",command=lambda: selectWells(False,advanceVar.get())).grid(row=0,column=0) File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 763, in selectWells updatePlatePlot(changedInbox,0) File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 535, in updatePlatePlot figax1.legend.remove() AttributeError: 'NoneType' object has no attribute 'remove' /opt/anaconda3/lib/python3.8/site-packages/pandas/core/indexing.py:670: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy iloc._setitem_with_indexer(indexer, value) /opt/anaconda3/lib/python3.8/site-packages/pandas/core/indexing.py:670: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy iloc._setitem_with_indexer(indexer, value) Exception in Tkinter callback Traceback (most recent call last): File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/mathtext.py", line 2617, in parse result = self._expression.parseString(s) File "/opt/anaconda3/lib/python3.8/site-packages/pyparsing.py", line 1955, in parseString raise exc File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/mathtext.py", line 2775, in unknown_symbol raise ParseFatalException(s, loc, "Unknown symbol: %s" % c) pyparsing.ParseFatalException: Unknown symbol: \, found '\' (at char 6), (line:1, col:7)

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "/opt/anaconda3/lib/python3.8/tkinter/init.py", line 1883, in call return self.func(args) File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 1021, in self.FinishButton = tk.Button(buttonWindow, text="Finish",command=lambda: collectInputs(),font='Helvetica 14 bold') File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 969, in collectInputs createLayoutVisual(baseLayoutDf,finalLayoutDict['keys'][i],i,level,levelValues,plateDimensions,numRowPlates,numColumnPlates,dt,infoDf,vlinelist,hlinelist) File "/opt/anaconda3/lib/python3.8/site-packages/plateypus/setup/createPlateLayout.py", line 422, in createLayoutVisual plt.savefig('plots/plateLayouts/plateLayout-'+currentLevel+'-'+dt+'.png',bbox_inches='tight') File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/pyplot.py", line 859, in savefig res = fig.savefig(args, kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/figure.py", line 2311, in savefig self.canvas.print_figure(fname, kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/backend_bases.py", line 2193, in print_figure self.figure.draw(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/artist.py", line 41, in draw_wrapper return draw(artist, renderer, *args, kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/figure.py", line 1863, in draw mimage._draw_list_compositing_images( File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/image.py", line 131, in _draw_list_compositing_images a.draw(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/artist.py", line 41, in draw_wrapper return draw(artist, renderer, *args, *kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/cbook/deprecation.py", line 411, in wrapper return func(inner_args, inner_kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/axes/_base.py", line 2747, in draw mimage._draw_list_compositing_images(renderer, self, artists) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/image.py", line 131, in _draw_list_compositing_images a.draw(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/artist.py", line 41, in draw_wrapper return draw(artist, renderer, *args, **kwargs) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/legend.py", line 606, in draw bbox = self._legend_box.get_window_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 346, in get_window_extent w, h, xd, yd, offsets = self.get_extent_offsets(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 471, in get_extent_offsets whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 471, in whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 341, in get_extent w, h, xd, yd, offsets = self.get_extent_offsets(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 544, in get_extent_offsets whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 544, in whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 341, in get_extent w, h, xd, yd, offsets = self.get_extent_offsets(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 471, in get_extent_offsets whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 471, in whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 341, in get_extent w, h, xd, yd, offsets = self.get_extent_offsets(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 544, in get_extent_offsets whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 544, in whd_list = [c.get_extent(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/offsetbox.py", line 886, in get_extent bbox, info, d = self._text._get_layout(renderer) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/text.py", line 293, in _get_layout w, h, d = renderer.get_text_width_height_descent( File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py", line 233, in get_text_width_height_descent self.mathtext_parser.parse(s, self.dpi, prop) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/mathtext.py", line 3340, in parse return self._parse_cached( File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/mathtext.py", line 3364, in _parse_cached box = self._parser.parse(s, font_output, fontsize, dpi) File "/opt/anaconda3/lib/python3.8/site-packages/matplotlib/mathtext.py", line 2619, in parse raise ValueError("\n".join(["", ValueError: \bfRIG-I construct ^ Unknown symbol: \, found '\' (at char 6), (line:1, col:7)

[soorajachar]

What characters did you use exactly that threw the error? Was it fixed when you switched back to alphanumeric characters?

[Immunodynamics]

The name of the construct was: RIG-I [K58A] I believe the – was not to Plateypus’s taste

From: soorajachar @.> Reply-To: soorajachar/plateypus @.> Date: Wednesday, May 19, 2021 at 5:06 AM To: soorajachar/plateypus @.> Cc: "Immunodynamics Group, NCI" @.>, Author @.***> Subject: Re: [soorajachar/plateypus] Use of characters in layout: not OK? (#6)

What characters did you use exactly that threw the error? Was it fixed when you switched back to alphanumeric characters?

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[soorajachar]

Yeah I fixed the hyphen issue but not the brackets; I'll look into that now

[soorajachar]

Fixed in plateypus 0.1.18