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spectra-cluster
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spectra-cluster-2
A complete re-write of the spectra-cluster codebase
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Bump logback-core from 1.2.3 to 1.2.9
#110
dependabot[bot]
opened
1 year ago
0
Added support for .clustering output and central config through ClusteringParameters
#109
jgriss
closed
3 years ago
2
Improve PTM support in output files
#108
jgriss
opened
3 years ago
0
Bump junit from 4.12 to 4.13.1
#107
dependabot[bot]
closed
3 years ago
0
Improved CLI output
#106
jgriss
closed
3 years ago
0
Add support for PRIDE JSON as input file
#105
jgriss
opened
4 years ago
0
Added 'key features' section to README
#104
jgriss
closed
4 years ago
0
Fix MspWriterTest
#103
jgriss
closed
4 years ago
0
Error in test
#102
ypriverol
closed
4 years ago
3
update develop branch
#101
ypriverol
closed
4 years ago
0
Pr/99
#100
ypriverol
closed
4 years ago
0
Added support for MSP output
#99
jgriss
closed
4 years ago
2
Improve CLI output
#98
jgriss
closed
3 years ago
0
Central storage for clustering parameters
#97
jgriss
closed
4 years ago
0
Minor changes
#96
jgriss
closed
4 years ago
0
minor changes
#95
ypriverol
closed
4 years ago
0
Pr/93
#94
ypriverol
closed
4 years ago
3
Added support for parallel incremental clustering
#93
jgriss
closed
4 years ago
0
Find solution for temporary storage
#92
jgriss
closed
4 years ago
1
Updated storage classes
#91
jgriss
closed
4 years ago
0
Cleanup function in Sparkey storage fails if other files in directory
#90
jgriss
closed
4 years ago
1
Major pull request including major changes for cache data storage
#89
ypriverol
closed
4 years ago
1
Improve the README
#88
ypriverol
opened
5 years ago
0
Implement and test incremental clustering
#87
jgriss
closed
4 years ago
1
Add converter for spectral library format(s)
#86
jgriss
opened
5 years ago
3
Milestone 0.1
#85
jgriss
closed
5 years ago
0
Addresses #69 Added QC infrastructure and first established QC checks.
#84
jgriss
closed
5 years ago
0
Fixes #64 Added noise filter increment as parameter to GreedyConsensu…
#83
jgriss
closed
5 years ago
0
Building on OpenJDK 11 fails
#82
jgriss
closed
5 years ago
8
High-resolution binner and interfaces
#81
jgriss
closed
5 years ago
4
Refactoring of the IPorpertyStorage - move to pgatk-io
#80
ypriverol
closed
5 years ago
1
Define the benchmark for spectral clustering 2.
#79
ypriverol
opened
5 years ago
4
Refactor PropertyStorage into pgatk-io
#78
ypriverol
closed
5 years ago
1
Optimised comparison predicate and added charge state filter
#77
jgriss
closed
5 years ago
0
Added number of loaded spectra to output
#76
jgriss
closed
5 years ago
1
Develop
#75
ypriverol
closed
5 years ago
1
Major refactoring to use pgatk-io instead of jmzreader
#74
ypriverol
closed
5 years ago
3
Exception when accessing metadata on some LSF nodes
#73
jgriss
closed
5 years ago
2
Optimised Kendall Tau correlation
#72
jgriss
closed
5 years ago
1
minor changes in the mgf reader to ignoreWrongPeaks
#71
ypriverol
closed
5 years ago
0
Add charge state to spectra
#70
jgriss
closed
5 years ago
0
Define quality metrics for clustering results
#69
jgriss
closed
5 years ago
0
Improve performance of MGF reader
#68
jgriss
closed
5 years ago
1
Failed parsing of PRIDE generated MGF files
#67
jgriss
closed
5 years ago
0
Hashmap replacement
#66
jgriss
closed
5 years ago
1
Test with different Java versions
#65
jgriss
opened
5 years ago
1
GreedyConsensusSpectrum Noise Filter ignores m/z binning
#64
jgriss
closed
5 years ago
0
Evaluate cold HashMap to store comparison filter results
#63
jgriss
closed
5 years ago
2
Evaluate efficiency of comparison filter
#62
jgriss
opened
5 years ago
1
Test storing peaks in HashSet
#61
jgriss
closed
5 years ago
2
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