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spinal-cord-7t / coil-qc-code

7T Spinal Cord Coil QC Analysis Code
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`sub-MPI1: Manual segmentation not found` #49

Closed jcohenadad closed 2 months ago

jcohenadad commented 2 months ago

Despite uploading the new data on OpenNeuro in #47, I got the message sub-MPI1: Manual segmentation not found.

Cause of the issue: code is looking for:

    fname_manual_seg = os.path.join(path_labels, subject, "anat", f"{subject}_UNIT1-SC_seg.nii.gz")

Whereas the labels are named: sub-MPI1_UNIT1_label-SC_seg.nii.gz