coil-qc-code

This repository contains a reproducible Jupyter notebook for the manuscript titled "Multi-center benchmarking of cervical spinal cord RF coils at 7 T: A traveling spines study"

Instructions to run the notebook locally:

Install Spinal Cord Toolbox

Clone this repository

git clone https://github.com/spinal-cord-7t/coil-qc-code.git 
cd coil-qc-code

Install Python dependencies (assuming Python is already installed)

pip install -r requirements.txt

Download datasets

openneuro-py download --dataset ds005025 --target-dir data-human/
openneuro-py download --dataset ds005090 --target-dir data-phantom/

Run notebooks

jupyter notebook data_processing-human.ipynb
jupyter notebook data_processing-phantom.ipynb