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spinal-cord-7t / coil-qc-code

7T Spinal Cord Coil QC Analysis Code
https://spinal-cord-7t.github.io/coil-qc-code/README.html
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Multi-center benchmarking of cervical spinal cord RF coils at 7 T: A traveling spines study

example workflow Dataset human Dataset phantom Jupyter Book Badge

This repository contains a reproducible Jupyter notebook for the manuscript titled "Multi-center benchmarking of cervical spinal cord RF coils at 7 T: A traveling spines study"

See the notebook results

You can access the processed notebooks with outputs by clicking on the Jupyter Book badge 👆

Run the notebook locally

Install Spinal Cord Toolbox

Clone this repository

git clone https://github.com/spinal-cord-7t/coil-qc-code.git 
cd coil-qc-code

Install Python dependencies (assuming Python is already installed)

pip install -r requirements.txt

Run notebooks

jupyter notebook data_processing-human.ipynb
jupyter notebook data_processing-phantom.ipynb