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spinalcordtoolbox
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manual-correction
Scripts for the manual correction of spinal cord labels
MIT License
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Remove `-manual` suffix
#51
valosekj
closed
1 year ago
1
Warning about missing label files - the script does not check `derivatives`
#50
valosekj
closed
1 year ago
8
Keep track of correction and resume correction
#49
NathanMolinier
closed
1 year ago
2
Allow other suffixes than `-manual`
#48
valosekj
closed
1 year ago
7
Add more than 20 discs labels
#47
NathanMolinier
closed
1 year ago
3
Do not skip subject if other contrast does not exist
#46
valosekj
opened
1 year ago
0
Add support for 3D Slicer
#45
valosekj
opened
1 year ago
0
Clarification of `manual-correction.py` use cases
#44
valosekj
opened
1 year ago
1
Fix path confusion when using `manual_correction.py`
#43
NathanMolinier
closed
1 year ago
7
Add a new variable to be able to overwrite several files
#42
NathanMolinier
closed
1 year ago
3
`-path-out` could be automatically set to `-path-in`
#41
NathanMolinier
closed
1 year ago
2
Issue with manual suffix addition
#40
NathanMolinier
closed
1 year ago
3
Limit warnings raised by `check_files_exist`
#39
valosekj
closed
1 year ago
0
Limit warnings raised by `check_files_exist` when running another round of corrections
#38
valosekj
closed
1 year ago
0
Allow compression labeling
#37
valosekj
closed
1 year ago
1
Allow compression labels
#36
valosekj
closed
1 year ago
0
Missing files error when using `*` wildcard
#35
valosekj
closed
1 year ago
6
Discuss JSON sidecar usage for correcting/verifying segmentations
#34
joshuacwnewton
closed
9 months ago
4
Add centerline correction
#33
valosekj
closed
1 year ago
1
`-path-derivative` and `-path-out` are redundant
#32
valosekj
closed
1 year ago
4
Add centerline manual correction
#31
valosekj
closed
1 year ago
0
Add CI for utils.py
#30
valosekj
closed
1 year ago
0
`-add-seg-only` flag should be moved to `copy_files_to_derivatives.py`
#29
valosekj
opened
1 year ago
1
Add progress bar
#28
valosekj
closed
1 year ago
1
Keep track of progression during manual correction
#27
NathanMolinier
closed
1 year ago
0
Add clarity with warning color to log output for missing files and labels
#26
NathanMolinier
closed
1 year ago
1
Check if label files exist v2
#25
valosekj
closed
1 year ago
1
Check if label files exist
#24
valosekj
closed
1 year ago
1
Check if label file exists before starting the script
#23
valosekj
closed
1 year ago
0
Remove suffix choice list in parser to handle new unreferenced suffix more easily
#22
NathanMolinier
closed
1 year ago
2
suffixes listed under `choices` might be limiting
#21
valosekj
closed
1 year ago
0
"open different orthoview" script fails on Windows
#20
valosekj
opened
1 year ago
0
Do not update json sidecar if the label file was not modified
#19
valosekj
closed
1 year ago
1
Update wiki
#18
valosekj
closed
1 year ago
1
add more info about viewers
#17
jcohenadad
closed
1 year ago
0
Allow providing the options for denoising
#16
valosekj
opened
1 year ago
0
Allow creation of empty mask
#15
valosekj
closed
1 year ago
1
Allow iterating across all subjects using wildcard
#14
valosekj
closed
1 year ago
1
Allow specifying additional FSLeyes arguments
#13
valosekj
closed
1 year ago
3
Fix description of `manual_correction.py`
#12
sandrinebedard
closed
1 year ago
2
With option load other contrast, opens wrong lesion segmentation of other contrast
#11
sandrinebedard
closed
1 year ago
2
Add option to open different orthoview in FSLEYES
#10
jcohenadad
closed
1 year ago
2
Add parameter to min/max image intensity in FSLEYES
#9
sandrinebedard
closed
1 year ago
1
Load additional contrast + allow denoising
#8
valosekj
closed
1 year ago
1
JSON files updated despite no manual correction
#7
naga-karthik
closed
1 year ago
5
Add color option as additional argument for FSLeyes
#6
naga-karthik
closed
1 year ago
1
`manual_correction.py` - allow to iterate across all subjects
#5
valosekj
closed
1 year ago
0
`manual_correction.py` - allow to create MS lesion from scratch
#4
valosekj
closed
1 year ago
0
`manual_correction.py` - add option to update `json` sidecars
#3
naga-karthik
closed
1 year ago
2
Generalize manual correction scripts
#2
valosekj
closed
1 year ago
2
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