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sriram-lab
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emt-cobra
Modeling the metabolic changes during the epithelial-to-mesenchymal transition.
https://sriram-lab.github.io/emt-cobra/
GNU General Public License v3.0
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Add gurobi
#55
ScottCampit
closed
3 years ago
0
Expression heatmap
#54
ScottCampit
closed
3 years ago
0
Cobra analysis
#53
ScottCampit
closed
3 years ago
0
Reorganized directory structure and updated README
#52
ScottCampit
closed
3 years ago
0
Added new boxplots that separates metastatic and primary sites
#51
ScottCampit
closed
3 years ago
0
Crispr analysis
#50
ScottCampit
closed
3 years ago
0
Crispr analysis
#49
ScottCampit
closed
3 years ago
0
Shiny
#48
ScottCampit
closed
3 years ago
0
Organize R notebooks to reflect analysis steps
#46
ScottCampit
closed
3 years ago
0
Scampit dev
#45
ScottCampit
closed
3 years ago
0
Scampit dev
#44
ScottCampit
closed
3 years ago
0
Modified path for rho1 experiment
#43
ScottCampit
closed
3 years ago
0
Create recon1_scCOBRA_rho1.m
#42
ScottCampit
closed
3 years ago
0
Scampit dev
#41
ScottCampit
closed
3 years ago
0
revise
#40
ScottCampit
closed
3 years ago
0
Added new save file path
#39
ScottCampit
closed
3 years ago
0
Scampit dev
#38
ScottCampit
closed
3 years ago
0
Scampit dev
#37
ScottCampit
closed
3 years ago
0
Edit DRSA scripts
#36
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#35
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#34
ScottCampit
closed
3 years ago
0
Re-edit computation scripts
#33
ScottCampit
closed
3 years ago
0
Re-introduce wrapper function for saving results
#32
ScottCampit
closed
3 years ago
0
Evaluate robustness of knockouts from experimental data
#31
ScottCampit
closed
3 years ago
1
Analyze CRISPR-Cas9 batch corrected scores
#30
ScottCampit
closed
3 years ago
1
Fix bugs in RECON1 analysis
#29
ScottCampit
closed
3 years ago
0
Re-examine bulk simulations
#28
ScottCampit
closed
3 years ago
1
Experimental validation
#27
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#26
ScottCampit
closed
3 years ago
0
SImplify parpool allications
#25
ScottCampit
closed
3 years ago
0
Restructured scripts to simplify parfor loop
#24
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#23
ScottCampit
closed
3 years ago
0
Re-perform single-cell experiments using new scCOBRA methodology
#22
ScottCampit
closed
3 years ago
0
Address all points in v0.2 in manuscript
#21
ScottCampit
closed
3 years ago
1
Resolved overnight dependency issues
#20
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#19
ScottCampit
closed
3 years ago
0
Update recon1_scCOBRA.m
#18
ScottCampit
closed
3 years ago
0
Fix minor bug and added gurobi module load to slurm scscripts
#17
ScottCampit
closed
3 years ago
0
Fixed parpool
#16
ScottCampit
closed
3 years ago
0
Scampit dev
#15
ScottCampit
closed
3 years ago
0
added new pool
#14
ScottCampit
closed
3 years ago
0
Add cobratoolbox path
#13
ScottCampit
closed
3 years ago
0
modified dir
#12
ScottCampit
closed
3 years ago
0
Turn function to call file
#11
ScottCampit
closed
3 years ago
0
Add full path to resolve error
#10
ScottCampit
closed
3 years ago
0
Scampit dev
#9
ScottCampit
closed
3 years ago
0
Finalize code to reflect easier data structure readout
#8
ScottCampit
closed
3 years ago
0
Scampit dev
#7
ScottCampit
closed
3 years ago
0
Cleaned up pipe for scCOBRA
#6
ScottCampit
closed
3 years ago
0
Scampit dev
#5
ScottCampit
closed
3 years ago
0
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