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ssi-dk
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bifrost
MIT License
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Documentation link at readme.md yields a 404
#85
KasperThystrup
opened
2 years ago
0
Change to support S.sonnei as E.coli on ariba_mlst and removing symlinks
#84
PovilasMat
closed
2 years ago
0
Adding kma_pointmutations and reslab_stamper
#83
PovilasMat
closed
2 years ago
0
chewBBACA component for Bifrost
#81
finngl
closed
1 year ago
4
QC score
#80
finngl
opened
3 years ago
4
Update submodule hashes
#79
githubz0r
closed
3 years ago
0
move bifrostlib and resfinder to latest commits
#78
githubz0r
closed
3 years ago
0
Requirements not passed failing the component
#77
martinbaste
opened
3 years ago
0
Fix for bifrost_run_launcher test will affect other tests as calling run_program isn't neccesary or desired now
#76
kimleeng
closed
3 years ago
0
Adjust sample_component path to include final path not just sample path
#75
kimleeng
opened
4 years ago
0
Create version tag for all components and check dockerhub (update github actions)that it reflects properly
#74
kimleeng
closed
4 years ago
1
turn bifrost into bifrostlib submodule and reporter submodule so that bifrost is just the collection and documentation organization
#73
kimleeng
closed
4 years ago
0
Update datahandling.py
#72
kimleeng
closed
4 years ago
0
push newest bifrostlib to all components
#71
kimleeng
opened
4 years ago
0
Fix issue where a component requirement isn't working. Currently it's checking off it's own id and not that of the target.
#70
kimleeng
closed
4 years ago
0
custom run creation basic functionality
#69
martinbaste
closed
4 years ago
0
Split tests into fast and slow (or unit/integration) so that the watchdog runs quick ones first and then bigger ones after for faster feedback loops
#68
kimleeng
opened
4 years ago
0
Update tests with new bifrostlib functionality
#67
kimleeng
opened
4 years ago
0
Update bifrostlib for samplecomponents to reflect schema2.0 and beyond, right now its more hardcoded for snakemake purposes
#66
kimleeng
opened
4 years ago
0
Add input species for components with a species requirement. This is so if the user changes the species the component still has info on which species it ran against
#65
kimleeng
opened
4 years ago
0
Download finders result for selected samples as csv
#64
martinbaste
opened
4 years ago
0
Columns can be added/hidden by the user
#63
martinbaste
opened
4 years ago
0
Clean up setup folder. shouldnt be needed but currently dockerfiles in others are pulling common resources from it. Should move those into the components (or base)
#62
kimleeng
closed
4 years ago
0
Change it so components can be re-installed onto themselves (for development adjustments to config.yaml) as deleting from DB to update is less than ideal.
#61
kimleeng
closed
4 years ago
0
Dockerize run_launcher
#60
kimleeng
closed
4 years ago
0
Fix setup to install indexes for DB and species install.
#59
kimleeng
opened
4 years ago
0
create a docker for bifrost launcher
#58
kimleeng
closed
4 years ago
1
Add old azure devops CI/CD into github actions
#57
kimleeng
opened
4 years ago
1
Fix bug in container automation and add more for latest and dev
#56
kimleeng
closed
4 years ago
0
Create github actions for creating docker images on release tags
#55
kimleeng
closed
4 years ago
0
Mountable output folder for docker images
#54
kimleeng
opened
4 years ago
0
2.0.6 release
#53
kimleeng
closed
4 years ago
0
Run class not checking against run name properly
#52
kimleeng
closed
4 years ago
0
Establish test data set which can be attached via mongo atlas
#51
kimleeng
closed
4 years ago
1
Add species interface for managing species and alias's
#50
kimleeng
closed
4 years ago
0
Update documentation to reflect schema2.0
#49
kimleeng
closed
8 months ago
1
Convert user feedback into a sample component
#48
kimleeng
opened
4 years ago
0
Generate requirements for a validation set
#47
kimleeng
opened
4 years ago
0
Look into anonymization mappings for fields
#46
kimleeng
opened
4 years ago
1
Add a interface for managing species and there mappings
#45
kimleeng
opened
4 years ago
0
Create github actions to automate testing
#44
kimleeng
closed
4 years ago
0
Adjust it so that components store installation path
#43
kimleeng
closed
4 years ago
0
Port over non public components for schema 2.0
#42
kimleeng
opened
4 years ago
0
Unify classes and api for different DB requests and api into one location
#41
kimleeng
opened
4 years ago
0
Add loading bars/spinners to data tables if possible
#40
kimleeng
opened
4 years ago
0
Look into showing contigs/coverage in a more intuitive way
#39
kimleeng
opened
4 years ago
0
Change data plots for QC to show a pregenerated density plot
#38
kimleeng
opened
4 years ago
1
Adjust docker images to utilize a scratch folder
#37
kimleeng
opened
4 years ago
1
Adjust components to have a unique name based on name, version, db_date
#36
kimleeng
opened
4 years ago
0
Add a wideview for the QC dashboard
#35
kimleeng
closed
4 years ago
1
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