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statbiophys
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soNNia
GNU General Public License v3.0
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Use polars as a backend for data manipulation
#24
zacmon
opened
2 months ago
0
Add a check that no features are missing
#23
zacmon
opened
2 months ago
0
human B heavy V and J anchors are wrong
#22
zacmon
opened
2 months ago
0
Edited add_generated_seqs logging statement to work with paired models. Added paired model inference to tests
#21
zacmon
closed
2 months ago
0
Created SoniaDataset for mini-batching.
#20
zacmon
closed
2 months ago
0
Fixed filtering and loading gen_seqs for ppost_model
#19
zacmon
closed
3 months ago
0
Mitigate RAM issues with dense one-hot encoding, fixed plotting functions
#18
zacmon
closed
3 months ago
0
Revert "Revert "Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array""
#17
giulioisac
closed
3 months ago
0
Revert "Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array"
#16
giulioisac
closed
3 months ago
0
Migrated to Keras3, changed encoding backend to scipy.sparse.csr_array
#15
zacmon
closed
3 months ago
2
Wrong model initializations are caught with helpful error messages
#14
zacmon
closed
3 months ago
1
Missing TRA V/J combinations in generated repertoires
#13
ejackson054
closed
5 months ago
4
More error checking
#12
zacmon
closed
6 months ago
3
compare repertoires
#11
giulioisac
closed
6 months ago
0
toml
#10
giulioisac
closed
6 months ago
0
Merge from single class
#9
giulioisac
closed
7 months ago
0
Parallelized sequence generation and linear energy computation
#8
zacmon
closed
7 months ago
1
Fixed loading of paired models. Processor class is now a singular utils function. Across chain features added for paired class.
#7
zacmon
closed
8 months ago
0
Feature request: consolidating chain_type and custom_pgen_model into one argument: pgen_model
#6
zacmon
closed
9 months ago
1
Optimized processing and functions in paired model. Continued tidying and modularizing code.
#5
zacmon
closed
9 months ago
4
Optimized various functions. Added typing.
#4
zacmon
closed
9 months ago
1
Fixed joint feature loading. Sped up feature extraction. Removed redundant for loops. Adding typing.
#3
zacmon
closed
9 months ago
2
how to compare repertoires
#2
vanessajmh
closed
2 years ago
1
nans obtained when training the model with very different pre and post dataset sizes
#1
adigioacchino
closed
6 months ago
0