statisticalbiotechnology quandenser-pipeline issues

statisticalbiotechnology / quandenser-pipeline

A nextflow/singularity pipeline for quandenser

Apache License 2.0

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issues

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singularity error when running `./Quandenser_pipeline.sh -U`

#37 tobiasko opened 3 years ago
7
Kernel issues with installer

#36 b4yne opened 3 years ago
1
Custom config directory not mounted by default

#35 TimothyBergstrom opened 4 years ago
0
Multiple fixes

#34 TimothyBergstrom closed 4 years ago
0
WSL2 BoxCar and Triqler not working due to python multiprocessing errors

#33 TimothyBergstrom opened 4 years ago
0
Backwards-compatibility in Singularity (v3 -> v2)

#32 TimothyBergstrom closed 4 years ago
3
GUI freeze on WSL2

#31 TimothyBergstrom closed 4 years ago
2
Check all dependencies in shell script

#30 TimothyBergstrom opened 4 years ago
0
Where is maracluster

#29 andrewjmc closed 4 years ago
1
Warnings in stdout

#28 andrewjmc closed 4 years ago
3
Continuing interrupted jobs

#27 andrewjmc closed 4 years ago
6
Tracking progress from command line

#26 andrewjmc closed 4 years ago
1
Hardcoded /tmp

#25 andrewjmc closed 4 years ago
7
Exception caught: Error: no target PSMs were provided. Bad data or bug?

#24 TimothyBergstrom opened 4 years ago
0
MSconvert hangs, preventing pipeline progression

#23 TimothyBergstrom closed 4 years ago
2
MSconvert crash, caused by failed singularity mount (loop devices)

#22 TimothyBergstrom closed 4 years ago
3
Running jobs says "Failed" even though the pipeline is still running

#21 TimothyBergstrom closed 5 years ago
2
MSconvert fails to create files

#20 TimothyBergstrom closed 5 years ago
2
Parallelization is sometimes slow

#19 TimothyBergstrom opened 5 years ago
4
Exception caught: Dinosaur failed with exit code -1. Terminating..

#18 TimothyBergstrom closed 5 years ago
1
MSconvert crashes with weird error

#17 TimothyBergstrom closed 5 years ago
1
Minor issue: Cluster arguments and cluster queue not showing up

#16 TimothyBergstrom closed 5 years ago
1
Exception caught: vector::_M_range_check: __n (which is X) >= this->size() (which is Y)

#15 TimothyBergstrom opened 5 years ago
0
java.lang.NumberFormatException: For input string: "-nan"

#14 TimothyBergstrom opened 5 years ago
0
Combine CPU values for cluster

#13 TimothyBergstrom closed 5 years ago
1
SSH to a host with no nvidia drivers from a computer with nvidia drivers makes the GUI not start

#12 TimothyBergstrom opened 5 years ago
0
Too high values for crux

#11 TimothyBergstrom closed 5 years ago
0
Change print error to message boxes

#10 TimothyBergstrom closed 5 years ago
1
Dev to master

#9 TimothyBergstrom closed 5 years ago
0
Message box when restarting GUI says "Successful" even if it crashes

#8 TimothyBergstrom closed 5 years ago
1
Add argument checker on Quandenser_pipeline.sh

#7 TimothyBergstrom closed 4 years ago
1
Auto-calculate completion time

#6 TimothyBergstrom opened 5 years ago
0
*** stack smashing detected***: python terminated

#5 TimothyBergstrom opened 5 years ago
1
Auto-labeling is confusing

#4 TimothyBergstrom closed 5 years ago
2
akka.actor.UnstartedCell cannot be cast to akka.actor.ActorCell

#3 TimothyBergstrom opened 5 years ago
4
Merging fork to master

#2 TimothyBergstrom closed 5 years ago
0
added logbook to log/logbook.md, change if needed

#1 TimothyBergstrom closed 5 years ago
0