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steineggerlab
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Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
GNU General Public License v3.0
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build mac OS first
#50
jaebeom-kim
closed
11 months ago
0
remove unused header file
#49
jaebeom-kim
closed
11 months ago
0
make modules under development invisible
#48
jaebeom-kim
closed
12 months ago
0
gradeByCladeSize.cpp
#47
jaebeom-kim
closed
12 months ago
0
1. regression update, 2. example db update
#46
jaebeom-kim
closed
12 months ago
0
Updates for revision
#45
jaebeom-kim
closed
12 months ago
0
Metabuli updated for revision
#44
jaebeom-kim
closed
12 months ago
0
Random Bus error during database building
#43
ksandor79
closed
9 months ago
7
Bus error (core dumped)
#42
matsepp
closed
11 months ago
8
Metabuli produces very different results from mmseqs on longread contigs
#41
sgalkina
opened
1 year ago
3
fix dynamic-stack-buffer-overflow during `build`
#40
jaebeom-kim
closed
1 year ago
0
fix memeroy leaks
#39
jaebeom-kim
closed
1 year ago
0
Support *.fna.gz and *.fq.gz query files in classify module
#38
jaebeom-kim
closed
1 year ago
0
Support *.fna.gz and *.fq.gz query files in classify module
#37
jaebeom-kim
closed
1 year ago
0
Add the full taxonomic classification to JobID_classifications.tsv
#36
Serka-M
opened
1 year ago
0
Add regression test
#35
jaebeom-kim
closed
1 year ago
0
Add regression test
#34
jaebeom-kim
closed
1 year ago
0
Fix issue #32
#33
jaebeom-kim
closed
1 year ago
0
Metabuli mvdb run forever
#32
rdenise
closed
1 year ago
2
Database with single pan-genome
#31
snayfach
closed
1 year ago
3
Bus error (core dumped)
#30
bcpd
closed
1 year ago
2
Species missing from Metabuli, but detected with Kraken 1/2
#29
sjaenick
closed
1 year ago
5
Updated readme for Krona
#28
jaebeom-kim
closed
1 year ago
0
Update README.md
#27
jaebeom-kim
closed
1 year ago
0
Solve memory leaks
#26
jaebeom-kim
closed
1 year ago
0
Fix a bug in masking low complexity regions of query reads.
#25
jaebeom-kim
closed
1 year ago
0
typo fix
#24
sjaenick
closed
1 year ago
0
add --match-per-kmer option in classify workflow
#23
jaebeom-kim
closed
1 year ago
0
add --match-per-kmer option in classify workflow
#22
jaebeom-kim
closed
1 year ago
0
Updates for issue 18,19,20.
#21
jaebeom-kim
closed
1 year ago
0
Low complexity regions in query reads.
#20
jaebeom-kim
closed
8 months ago
10
Memory unit consistency
#19
sean-workman
closed
1 year ago
2
metabuli-inspect?
#18
sjaenick
closed
1 year ago
2
Fix issue#15: ignore reads shorter than 26 nt.
#17
jaebeom-kim
closed
1 year ago
0
Help to understand aa and dna identity score calculations
#16
StromTroopers
closed
1 year ago
2
More segmentation faults
#15
sean-workman
closed
1 year ago
13
Will compressed fastq.gz files be available as input in the future?
#14
StromTroopers
closed
11 months ago
4
Switch to ordered map for reproducible outputs
#13
sjaenick
closed
1 year ago
0
Inconsistency of read assignments
#12
sjaenick
closed
1 year ago
9
Fix segfaults in #10
#11
sjaenick
closed
1 year ago
4
Metabuli v1.0.0 segfault
#10
sjaenick
closed
1 year ago
8
Fixed database download module
#9
jaebeom-kim
closed
1 year ago
0
Add databases module
#8
jaebeom-kim
closed
1 year ago
0
First release
#7
jaebeom-kim
closed
1 year ago
0
Publication
#6
jaebeom-kim
closed
1 year ago
0
Metabuli 1.0
#5
jaebeom-kim
closed
1 year ago
0
Metabuli 1.0
#4
jaebeom-kim
closed
1 year ago
0
Smaller Match structure
#3
jaebeom-kim
closed
2 years ago
0
Updates
#2
jaebeom-kim
closed
2 years ago
0
Reduced alphabet, spacing mask, faster indexing
#1
jaebeom-kim
closed
2 years ago
0
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