With this project, We will statistically model replacement of red meat consumption with legumes in relation to incident primary liver cancer and assess whether the association is mediated through non-alcoholic fatty liver disease (NAFLD).
If dependencies have been managed by using
usethis::use_package("packagename")
through the DESCRIPTION
file,
installing dependencies is as easy as opening the .Rproj
file and
running this command in the console:
pak::pak()
To build the reports and papers to PDF, you'll need to install TinyTeX:
tinytex::install_tinytex()
The data-raw/
folder contains the scripts to select, process, and
prepare the data on the RAP to eventually be downloaded.
The steps to take to select the variables you want, create the CSV file on the RAP and download to your project on RAP. The order is:
data-raw/project-variables.csv
.data-raw/create-data.R
script and
run it to create the CSV file on the RAP server.targets::tar_make()
to download the CSV file to data/
and
get the project analysis to the current state.The following folders contain:
data/
: Will contain the UK Biobank data (not saved to Git) as well
as the intermediate results output files.
data-raw/
: Contains the R script to download the data, as well as
the CSV files that contain the project variables and the variable
list as named in the RAP.
doc/
: This file contains the R Markdown, Word, or other types of
documents with written content, like the manuscript and protocol.
R/
: Contains the R scripts and functions to create the figures,
tables, and results for the project.