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stephenslab
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susieR
R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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Use only one of ggplot2 or graphics for creating plots
#37
pcarbo
opened
5 years ago
2
Name & behavior & side-effect handling of `null_weight`
#36
gaow
closed
5 years ago
2
Deal with special case of 0 elements in XtX
#35
zouyuxin
closed
5 years ago
1
Update susie_ss to sparse version
#34
zouyuxin
closed
5 years ago
3
Update susie_ss example
#33
zouyuxin
closed
5 years ago
0
Update susie_ss according to sparse multiplication
#32
zouyuxin
closed
5 years ago
0
Sparse matrix v0.3
#31
KaiqianZhang
closed
5 years ago
0
A SuSiE data type
#30
gaow
closed
5 years ago
7
Redo prior variance
#29
gaow
closed
6 years ago
0
Sparse matrix multiplication
#28
KaiqianZhang
closed
6 years ago
3
Rename susie plot functions
#27
gaow
closed
5 years ago
13
Check input for `s_init` of `susieR::susie`
#26
gaow
closed
6 years ago
0
susieR with mixture prior
#25
stephens999
opened
6 years ago
2
`susie_get_CS` takes long time for large number of variables
#24
gaow
closed
6 years ago
3
Add elbo to susie_ss
#23
zouyuxin
closed
6 years ago
0
Add data analysis vignette
#22
gaow
closed
5 years ago
6
Same true effect captured by 2 fitted sets
#21
gaow
opened
6 years ago
4
Automatically choose `L`
#20
gaow
closed
6 years ago
3
Add "purity" filter
#19
gaow
closed
6 years ago
5
Change Xty to XtY
#18
zouyuxin
closed
6 years ago
0
Record number of iterations as a debug message
#17
gaow
closed
6 years ago
1
Add convergence tolerance for susie_ss
#16
zouyuxin
closed
6 years ago
0
susie using summary statistics Xty, XtX
#15
zouyuxin
closed
6 years ago
4
Change CI to CS and export lfsr and CI functions
#14
gaow
closed
6 years ago
0
add intercept and standardize arguments to `susie_auto`
#13
jhmarcus
closed
6 years ago
0
Add get_set_lfsr and get_effect_lfsr
#12
gaow
closed
6 years ago
1
check for non-varying X (at least when standardize=TRUE?)
#11
stephens999
closed
6 years ago
2
possible EM update for prior_variance in SER
#10
stephens999
closed
3 years ago
6
change to specify pve instead of prior variance?
#9
stephens999
closed
6 years ago
0
improve specification of prior variance to be PVE?
#8
stephens999
closed
6 years ago
12
NaN produced in `log(2 * pi * s$sigma2)`
#7
gaow
closed
3 years ago
26
Add option to initialize variational parameters
#6
jhmarcus
closed
6 years ago
5
rename output residual_variance and prior_variance
#5
stephens999
closed
6 years ago
1
implement centering/scaling functions for Y/X
#4
stephens999
closed
6 years ago
1
implement susie_trendfilter
#3
stephens999
closed
5 years ago
1
implement susie_auto
#2
stephens999
closed
5 years ago
0
generalize to allow sample-specific variance
#1
stephens999
opened
6 years ago
0
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