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stephenslab
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susieR
R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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Eigen decomp step
#86
julirsch
closed
5 years ago
2
summary statistics computation of var(y) is fragile
#85
stephens999
closed
5 years ago
1
Compute posterior variance of effects
#84
omerwe
closed
5 years ago
9
Effect of prior_weights on PIP
#83
jeales
closed
5 years ago
5
Inclusion of "standard" covariates?
#82
auton1
closed
3 years ago
9
Objective of final fit lower than initialization
#81
KaiqianZhang
opened
5 years ago
0
Approximations in susie_z
#80
zouyuxin
closed
5 years ago
10
Convergence in `trend_filtering` unit test
#79
gaow
closed
5 years ago
0
Finish up trend-filtering branch
#78
KaiqianZhang
closed
5 years ago
0
Cross CS correlation
#77
gaow
closed
3 years ago
0
Under the global null model, choice of L affects PIP
#76
aksarkar
closed
5 years ago
16
Add more information to susie_plot
#75
gaow
closed
5 years ago
0
Logistic regression
#74
drorberel
opened
5 years ago
10
Use `with` in place of `attach` for unit tests
#73
gaow
closed
5 years ago
1
Trend filtering new pull request
#72
KaiqianZhang
closed
5 years ago
1
trend filtering version 2
#71
KaiqianZhang
closed
5 years ago
7
Possible bugs in summary statistics version of SuSiE
#70
gaow
closed
5 years ago
7
coverage in susie_get_CS
#69
stephens999
closed
3 years ago
3
add examples for susie_trendfilter
#68
stephens999
closed
5 years ago
6
Trendfiltering
#67
KaiqianZhang
closed
5 years ago
0
Sample from SuSiE approximate posterior
#66
gaow
closed
3 years ago
11
Summary version check R for positive semi-definite takes too much time
#65
gaow
closed
5 years ago
4
concern that susie_init_coef does not play nicely with scaling issues
#64
stephens999
opened
5 years ago
1
Implement `susie_auto` in summary statistics version
#63
gaow
opened
5 years ago
1
non-normal residuals
#62
stephens999
opened
5 years ago
0
lower case in function names
#61
stephens999
closed
5 years ago
3
Fine-mapping in admixed individuals
#60
gaow
opened
5 years ago
0
How to do multi-enthnic fine-mapping?
#59
gaow
closed
3 years ago
1
susie_get_objective
#58
stephens999
closed
5 years ago
7
default for purity
#57
stephens999
closed
5 years ago
4
Improve SuSiE convergence
#56
gaow
opened
5 years ago
4
get_objective
#55
stephens999
closed
5 years ago
3
package name all lower case?
#54
stephens999
closed
5 years ago
3
New interface for summary statistics version
#53
gaow
closed
3 years ago
3
Implement `summary` function
#52
gaow
closed
3 years ago
2
Implement susieR for prior with mixture of two normals
#51
pcarbo
opened
5 years ago
7
Add Travis CI and/or Appveyor
#50
pcarbo
closed
5 years ago
0
Change intercept to intercept_value
#49
zouyuxin
closed
5 years ago
0
compute_ss function
#48
pcarbo
closed
5 years ago
4
More informative verbose output
#47
pcarbo
opened
5 years ago
0
Illustrate in vignettes how computation scales with sample size (n)
#46
pcarbo
opened
5 years ago
0
Add a `simple_sim` function
#45
gaow
closed
5 years ago
0
Add documentation for undocumented arguments
#44
pcarbo
closed
3 years ago
0
Change t(B)
#43
zouyuxin
closed
5 years ago
1
Do not create .Rd files for functions that are not exported
#42
pcarbo
closed
5 years ago
5
Rename `is_equal_` functions as `expect_` instead
#41
pcarbo
closed
5 years ago
3
Remove expressions of the form attributes(x) <- NULL
#40
pcarbo
closed
3 years ago
0
Implement "compute_MXt" entirely using matrix operations, without relying on "apply"
#39
pcarbo
closed
3 years ago
1
Fix argument names in coef and predict S3 methods
#38
pcarbo
opened
5 years ago
0
Use only one of ggplot2 or graphics for creating plots
#37
pcarbo
opened
5 years ago
2
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