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stephenslab
/
susieR
R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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Fix inaccuracy in help(susie)
#133
pcarbo
closed
2 years ago
0
susie_rss gives different results using different R
#132
Zepeng-Mu
closed
2 years ago
7
CS with individual level data
#131
CharliHarlow
closed
2 years ago
12
Confusion regarding the interpretation of output from confidence sets
#130
ZayedShahjahan373
closed
3 years ago
2
Effect size estimates
#129
joshchiou
closed
3 years ago
3
Document how to provide chromosomal positions of SNPs in susie_plot
#128
pcarbo
closed
3 years ago
0
Document estimate_s_rss return value
#127
pcarbo
closed
3 years ago
0
Document kriging_rss return value
#126
pcarbo
closed
3 years ago
0
Document susie_auto return value
#125
pcarbo
closed
3 years ago
0
Fill out missing documentation for get_cs_correlation
#124
pcarbo
closed
3 years ago
0
slow convergence example
#123
stephens999
closed
3 years ago
4
Issue with credible sets purity filtering when external LD is involved
#122
joshchiou
opened
3 years ago
18
susie_get_posterior_mean error
#121
cindywen96
closed
3 years ago
6
How to analyze a 2500G dataset that cannot fit into R all at once?
#120
garyzhubc
closed
3 years ago
3
Update dimensions for N3finemapping
#119
jdblischak
closed
3 years ago
1
Remove intercept in plot of coefficients in MWE vignette
#118
jdblischak
closed
3 years ago
0
Definition of purity of CS
#117
gaow
closed
3 years ago
1
Can susie remember variable names when fitting?
#116
garyzhubc
closed
3 years ago
4
Mixture models/GLM
#115
mariellabogoni
closed
2 years ago
3
different sets in high LD
#114
chr1swallace
closed
3 years ago
8
fix bug in susie_rss when passing a named z vector
#113
chr1swallace
closed
3 years ago
2
Sync cran branch with current `master`
#112
gaow
closed
3 years ago
0
Tasks for preparing CRAN submission
#111
pcarbo
closed
3 years ago
7
Finemapping multiple traits using susieR?
#110
MalteThodberg
closed
3 years ago
1
Reporting per-snp BFs
#109
trb8
closed
3 years ago
7
Cran
#108
gaow
closed
4 years ago
0
Add inst/CITATION
#107
pcarbo
closed
3 years ago
0
Use a more robust check for class membership
#106
CreRecombinase
closed
4 years ago
1
Numerous CS with very large log10 BF
#105
aob93
closed
3 years ago
14
Using LD from reference panel
#104
zx8754
closed
4 years ago
2
provide citation in readme
#103
stephens999
closed
4 years ago
0
Issue with specifying prior weights
#102
hsomineni
closed
2 years ago
2
Potentially decreasing ELBO due to check with zero when prior variances are estimated
#101
gaow
closed
4 years ago
1
No package called L0Learn
#100
pcarbo
closed
4 years ago
3
Is Susie sensitive to selection bias?
#99
guillaume-ramstein
closed
4 years ago
1
Add z score adjustment parameter to `susie_rss`
#98
gaow
closed
3 years ago
3
behaviour when residual_variance or scaled_prior_variance specified
#97
stephens999
opened
4 years ago
1
add functionality to sample from susie approximate posterior
#96
KangchengHou
closed
3 years ago
0
scaled_prior_variance > 1 not allowed
#95
pcarbo
closed
4 years ago
0
Improve the label of CS when some effects are filtered out
#94
gaow
closed
4 years ago
4
Add row/column names to outputs when row/column names are provided in inputs
#93
pcarbo
closed
3 years ago
1
Behavior of `s_init`
#92
gaow
closed
3 years ago
2
Updated vignette for `susie_rss`
#91
gaow
closed
4 years ago
13
Residual Variance Estimate Failed - Negative Value
#90
hsowards
closed
4 years ago
11
Setup points to incorrect version
#89
t-silvers
closed
5 years ago
1
Fix broken unit tests due to R version 3.6
#88
gaow
closed
5 years ago
1
Can correlation matrix be calculated from plink -r?
#87
xinyixinyijiang
closed
5 years ago
8
Eigen decomp step
#86
julirsch
closed
5 years ago
2
summary statistics computation of var(y) is fragile
#85
stephens999
closed
5 years ago
1
Compute posterior variance of effects
#84
omerwe
closed
5 years ago
9
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