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stephenslab
/
susieR
R package for "sum of single effects" regression.
https://stephenslab.github.io/susieR
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couldn't get susie converged although LD matrix seems fine
#182
PhoebeGuo97
closed
1 year ago
3
Many SNPs with low PIP in credible set
#181
PhoebeGuo97
closed
1 year ago
6
Credible set is a set of SNPs with the lowest p-value
#180
PhoebeGuo97
closed
1 year ago
4
susieR PIP
#179
catheriz
opened
1 year ago
9
Large number in lbf_variable matrix
#178
hbliu
closed
1 year ago
6
About setting the threads
#177
Jesson-mark
closed
1 year ago
3
IBSS algorithm did not converge in 100 iterations!
#176
liqingbioinfo
closed
1 year ago
27
susie sometimes fail to compute univariate z score when refine = T
#175
hsun3163
opened
1 year ago
3
Difference of SuSiE performance between WGS genotype and imputed genotype
#174
RL-m
opened
1 year ago
10
Fix typo in example code to remove covariates
#173
jdblischak
closed
1 year ago
1
How many SNPs are necessary
#172
rcliffo6
opened
1 year ago
19
susie_rss for one causal variant/locus
#171
kkdey
opened
1 year ago
4
Suggestively associated region with lots of highly correlated variants
#170
katherinef
opened
2 years ago
0
`susie_suff_stat `: Arguments changed?
#169
bschilder
opened
2 years ago
6
GWAS from LMMs
#168
AMCalejandro
opened
2 years ago
1
Error when following vignette for fine-mapping with sumstats
#167
dtaylo95
closed
2 years ago
6
Issue interpreting results
#166
akhilpampana
opened
2 years ago
18
Dimension mismatch in N2finemapping data
#165
aksarkar
closed
2 years ago
1
Coverage clarification
#164
RyanLongchamps
closed
2 years ago
12
No credible sets
#163
katherinef
opened
2 years ago
6
Residual Variance Estimate Failed - Negative Value
#162
tianwen0003
opened
2 years ago
21
Input data for eQTL fine-mapping by summary data
#161
tianwen0003
opened
2 years ago
1
Z-scores, beta and SE beta in susie
#160
carolynmcgrail
opened
2 years ago
2
"Prior variance is unreasonably large" and admixed samples
#159
ttumkaya
closed
2 years ago
6
Does it matter to use R2 instead of R for LD in susie_rss
#158
XiaoweiHu-Stat
closed
2 years ago
1
question about PIP and cs
#157
EchoLee0925
opened
2 years ago
10
get credible sets from susieR
#156
mariesaitou
closed
2 years ago
5
Error in objective function for estimate_s_rss
#155
aksarkar
closed
2 years ago
1
number of L
#154
MoMaz123
opened
2 years ago
1
default null_weight
#153
stephens999
opened
2 years ago
6
XtX + t(XtX))
#152
MoMaz123
opened
2 years ago
9
Susie_rss determining number of credible sets for region with high LD and large number of expected credible sets
#151
carolynmcgrail
opened
2 years ago
14
Run susieR on QTL datasets
#150
Al-Murphy
closed
2 years ago
3
how can I obtain a double-precision genotype matrix?
#149
ttian627
opened
2 years ago
9
LD matrix from PLINK 1.9 can be inconsistent with z-scores when --keep-allele-order is not specified
#148
pietznerm
closed
2 years ago
21
discrepancy in susie and susie_rss pip
#147
gk1610
opened
2 years ago
4
estimated prior variance is unreasonably large
#146
gk1610
opened
2 years ago
1
L2 estimate instead of LD matrix (R) for fine mapping summary stats
#145
kvshams
opened
2 years ago
1
High PIP but not in credible sets
#144
katherinef
closed
2 years ago
2
Reduce memory usage
#143
pcarbo
closed
2 years ago
11
Get NA value by function "compute_colSds"
#142
mushanliw
closed
2 years ago
8
High memory usage in susie, susie_suff_stat and susie_rss
#141
pcarbo
closed
2 years ago
5
Speeding up susie_rss for large numbers of variants?
#140
katherinef
closed
2 years ago
9
Is it possible to do whole genome analysis with susieR?
#139
garyzhubc
closed
2 years ago
2
Order of input
#138
katherinef
closed
2 years ago
2
update finemap.R wrapper for FINEMAP v1.4
#137
aryarm
closed
2 years ago
1
fine-mapping of GWAS from case-control data?
#136
kousathanas
closed
2 years ago
1
GWAS statistics and LD discrepancy due to inconsistent sample sizes across SNPs
#135
uncreativeusername
opened
2 years ago
15
Function to compute alternative sufficient statistics
#134
pcarbo
opened
2 years ago
1
Fix inaccuracy in help(susie)
#133
pcarbo
closed
2 years ago
0
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