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sterrettJD
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HoMiStats
Statistics for host-microbiome dual transcriptomics
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Add targeted testing with human GO terms and KOs from GMMs
#22
sterrettJD
closed
6 months ago
0
Add support for GMMs
#21
sterrettJD
closed
6 months ago
0
Include functions for parsing gut metabolic modules or other gene sets for targeted diff expression/interaction testing
#20
sterrettJD
opened
6 months ago
2
Add HoMiCorr func and support
#19
sterrettJD
closed
8 months ago
0
Fixes the progress bar in parallel implementation of run_mtxDE
#18
sterrettJD
closed
8 months ago
0
Parallelize run_mtxDE
#17
sterrettJD
closed
8 months ago
0
Make progress bar optional
#16
sterrettJD
closed
9 months ago
0
Add linear model options to run_mtxDE
#15
sterrettJD
closed
9 months ago
0
The progress bar in run_mtxDE is annoying in Rmd
#14
sterrettJD
closed
8 months ago
1
run_mtxDE using zibr converts terms (e.g., "HIV_Status") to "var1" "var2" etc
#13
sterrettJD
closed
6 months ago
1
run_mtxDE needs tests for linear models
#12
sterrettJD
closed
9 months ago
1
Parallelize run_mtxDE
#11
sterrettJD
closed
8 months ago
1
Would be nice to have a few functions for filtering count tables
#10
sterrettJD
opened
9 months ago
3
Error if no timepoint is provided for longitudinal data
#9
sterrettJD
closed
9 months ago
0
Fix realdata zibr errors
#8
sterrettJD
closed
9 months ago
0
ZIBR errors with real data
#7
sterrettJD
closed
9 months ago
1
Add ZIBR in addition to GAMLSS for mtxDE
#6
sterrettJD
closed
9 months ago
0
run_mtxDE doesn't incorporate random effects for ZIBR
#5
sterrettJD
closed
9 months ago
1
ZIBR doesn't currently address interactions
#4
sterrettJD
opened
9 months ago
0
Need corr network creation
#3
sterrettJD
opened
9 months ago
1
update gamlss to zibr?
#2
sterrettJD
closed
9 months ago
2
P.adjust needs to be done individually for each estimate (not intercepts)
#1
sterrettJD
closed
10 months ago
1