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superphy
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prairiedog
next-gen pangenome graphs for predictive genomics
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Bump wheel from 0.32.1 to 0.38.1
#156
dependabot[bot]
opened
1 year ago
0
Bump pip from 19.1.1 to 21.1
#155
dependabot[bot]
opened
2 years ago
0
Bump pip from 19.1.1 to 19.2
#154
dependabot[bot]
closed
2 years ago
1
0.2.0
#153
kevinkle
closed
4 years ago
1
Improvements for ease of use
#152
kevinkle
closed
4 years ago
0
Add a "delay" option when postings takes a long time to open
#151
kevinkle
closed
4 years ago
0
Switch to a base class for dgraph queries
#150
kevinkle
opened
4 years ago
0
Cache uids for all kmers
#149
kevinkle
opened
4 years ago
1
Add a pretty printer for hit results
#148
kevinkle
closed
4 years ago
1
Error in map phase of recent code
#147
kevinkle
closed
4 years ago
3
Add deploy lru, fixes to .rmtree() cast for pypy, and add profiler support
#146
kevinkle
closed
4 years ago
1
"uid_in" queries are slow
#145
kevinkle
opened
4 years ago
4
Support Dgraph Bulk Load
#144
kevinkle
closed
4 years ago
0
Fix pathlib.Path cast for PyPy, and set higher recursion limit
#143
kevinkle
closed
4 years ago
0
Add method for pretty-printing found paths
#142
kevinkle
closed
4 years ago
2
Don't call set_schema() if dgraph already initialized
#141
kevinkle
opened
4 years ago
0
Parallelize queries per path
#140
kevinkle
opened
4 years ago
0
Set --lru_mb when running query
#139
kevinkle
closed
4 years ago
1
Create a separate log for timing metrics
#138
kevinkle
opened
4 years ago
0
Add way to update Dgraph after bulk load
#137
kevinkle
opened
4 years ago
0
Support Dgraph Bulk Load
#136
kevinkle
closed
4 years ago
2
Consider dropping Py3.5 support
#135
kevinkle
closed
4 years ago
2
Error when first calling rule dgraph via snakemake
#134
kevinkle
opened
4 years ago
2
Add support for setting port offset for Snakefile
#133
kevinkle
opened
4 years ago
0
Initial integration with Dgraph
#132
kevinkle
closed
4 years ago
1
Set default backend to lemongraph until Dgraph bulk load is supported
#131
kevinkle
closed
4 years ago
1
Support running Dgraph Bulk in Docker
#130
kevinkle
closed
4 years ago
1
Added file exists check for mic csv
#129
kevinkle
closed
4 years ago
1
Load results of dgraph bulk into dgraph
#128
kevinkle
closed
4 years ago
5
Move Dgraph test wrapper into core codebase
#127
kevinkle
closed
4 years ago
1
Use Dgraph by default in Snakemake
#126
kevinkle
closed
4 years ago
1
Default to Dgraph on cli path queries
#125
kevinkle
closed
4 years ago
1
Support path queries in Dgraph
#124
kevinkle
closed
4 years ago
1
Try running via podman (rootless)
#123
kevinkle
closed
4 years ago
2
Loops in Dgraph queries
#122
kevinkle
closed
4 years ago
13
Add code for upserting nodes and edges to dgraph
#121
kevinkle
closed
4 years ago
0
Add code to query is node exists in dgraph
#120
kevinkle
closed
4 years ago
1
ImportError: No module named '_lzma'
#119
kevinkle
closed
4 years ago
1
Initial setup for dgraph integration
#118
kevinkle
closed
4 years ago
1
PyPy3.6 Support
#117
kevinkle
closed
4 years ago
0
Support testing against PyPy3.6
#116
kevinkle
closed
4 years ago
1
Support graph queries in dgraph
#115
kevinkle
closed
4 years ago
13
Tests against Dgraph in CircleCI
#114
kevinkle
closed
4 years ago
3
bufio crashed
#113
kevinkle
closed
4 years ago
10
Some way to get sets of genomes while accounting for sampling biases
#112
kevinkle
opened
4 years ago
0
"too many open files"
#111
kevinkle
closed
4 years ago
3
Investigate tagging genomes with ecological data
#110
kevinkle
opened
4 years ago
0
Try Dgraph Bulk Loader
#109
kevinkle
closed
4 years ago
9
"received trailing metadata size exceeds limit"
#108
kevinkle
closed
4 years ago
2
"Only leader can commit or abort"
#107
kevinkle
closed
5 years ago
3
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