Neurphys (pronounced "nervous") is an IO and analysis package built to streamline and standardize the data handling, analysis, and visualization of electrophysiology and calcium imaging data.
First, download Anaconda which will come with
most required libraries including numpy
, pandas
, scipy
.
Then download or clone the repository using git
as follows,
$ git clone https://github.com/surmeierlab/neurphys
You can download dependencies which we provide in requirements.txt
. Use pip
to install
the rest of dependencies i.e.
$ pip install -r requirements.txt
Install neurphys
using setup.py
as follows
$ python setup.py develop install
import neurphys as nu
Check out the tutorials page for jupyter notebooks showing specific use cases.