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svalkiers
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clusTCR
CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
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Floats in slice indices during pgen computation
#55
mrbarbitoff
opened
3 months ago
0
No objects to concatenate in clustering.fit
#54
mrbarbitoff
opened
3 months ago
3
Specify TCR chain
#53
svalkiers
closed
3 months ago
0
pgen calculation is hard-coded to use human TRB model
#52
mrbarbitoff
closed
3 months ago
3
Retrieve the centroids
#51
Ch-rode
opened
11 months ago
1
Examples in 'Clustering' raises different errors
#50
ustervbo
opened
1 year ago
1
issue with metaclustering and airr data
#49
guillemsanchezsanchez1996
opened
1 year ago
4
Levenshtein distance
#48
hananell
opened
1 year ago
0
scipy version update
#47
svalkiers
closed
1 year ago
0
Sklearn version
#46
svalkiers
closed
1 year ago
0
Clustering method for TCRdist
#45
jiangdada1221
closed
1 year ago
1
Vgene bugfix
#44
svalkiers
closed
1 year ago
0
NumPy-based motif generation
#43
vincentvandeuren
closed
1 year ago
0
Airr standards
#42
svalkiers
closed
1 year ago
0
Could you please create a release
#41
fizwit
closed
1 year ago
1
Urgent! Error using clustering.fit
#40
cz239
closed
1 year ago
1
Error installing using conda
#39
gregoryverghese
opened
2 years ago
4
Unequal-length sequences being clustered together
#38
frank-stonybrook
closed
2 years ago
1
Strange output
#37
deweihu96
closed
1 year ago
2
Vgene clustering
#36
svalkiers
closed
2 years ago
0
remove Levenshtein and pyteomics dependencies
#35
svalkiers
closed
2 years ago
0
Vgene clustering
#34
svalkiers
closed
2 years ago
0
Error in the clustcr.input.datasets
#33
DimChatz
closed
2 years ago
1
Sequences loss after clustering?
#32
pwwang
closed
2 years ago
3
Error message using .summary()
#31
dstcr
closed
1 year ago
1
predicting new TCR peptide to existing cluster
#30
linuxbioinfoguy
opened
2 years ago
1
Alpha chain documentation
#29
MaxVanHoucke
closed
3 years ago
0
Alphabeta + test and travis fixes
#28
MaxVanHoucke
closed
3 years ago
0
Levensthein
#27
svalkiers
closed
3 years ago
0
Visualization docs
#26
svalkiers
closed
3 years ago
0
Optimizations
#25
MaxVanHoucke
closed
3 years ago
0
Optimizations
#24
MaxVanHoucke
closed
3 years ago
0
Docs feature matrix
#23
MaxVanHoucke
closed
3 years ago
0
Repertoires feature matrix
#22
MaxVanHoucke
closed
3 years ago
0
How to import file output from MiXCR?
#21
Ming-Lian
closed
3 years ago
1
Travis
#20
MaxVanHoucke
closed
3 years ago
0
Tests
#19
MaxVanHoucke
closed
3 years ago
0
Doc clustering result
#18
MaxVanHoucke
closed
3 years ago
0
Mix of spaces and tabs in indentation caused error when running
#17
MaxVanHoucke
closed
3 years ago
0
Large data doc
#16
MaxVanHoucke
closed
3 years ago
0
Faiss large data
#15
MaxVanHoucke
closed
3 years ago
0
Gpu
#14
MaxVanHoucke
closed
3 years ago
0
Refactoring
#13
MaxVanHoucke
closed
3 years ago
0
Enabling Travis CI to automatically check if conda build is succesful
#12
MaxVanHoucke
closed
3 years ago
1
Readme
#11
MaxVanHoucke
closed
3 years ago
0
Documentation link in repo info (next to summary)
#10
MaxVanHoucke
opened
3 years ago
0
Conda
#9
MaxVanHoucke
closed
3 years ago
0
Clustering refactoring
#8
MaxVanHoucke
closed
3 years ago
0
Gpu output
#7
svalkiers
closed
3 years ago
0
Tcrdist
#6
svalkiers
closed
3 years ago
0
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