STracking is a python framework to develop particles tracking pipeline. This library has been developed to track intra-cellular object in microscopy 2D+t and 3D+t images, but can be use to any spots tracking application in 2D+t and 3D+t images.
The STracking development version is tested on Windows 10, MacOS and Linux operating systems. The developmental version of the package has been tested on the following systems:
conda for python 3 in the pathconda create --name stracking python=3.9.conda activate strackingSTrackinglibrary, run python -m pip install stracking. if you need to update to a new release, use:
python -m pip install stracking --upgradeThis install is for developers or people who want the last features in the main branch.
conda for python 3 in the pathconda create --name stracking python=3.9.conda activate strackingSTracking library from you local dir with: python -m pip install -e ./stracking. The STracking library is embedded in a napari plugin that allows using STracking with a graphical interface.
Please refer to the STracking napari plugin documentation to install and use it.
The full documentation with tutorial and docstring is available here