issues
search
tansey-lab
/
nuc2seg
Cell segmentation with deep learning
Other
1
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fix Baysor Sample Area Logic
#126
jeffquinn-msk
opened
1 week ago
0
Set Output to Optional
#125
jeffquinn-msk
closed
2 weeks ago
0
Fix Baysor Empty Area Issue
#124
jeffquinn-msk
closed
2 weeks ago
0
Fix Transcript Reader
#123
jeffquinn-msk
closed
2 weeks ago
0
Add IoU Calculation
#122
jeffquinn-msk
closed
2 weeks ago
0
Changes for Running on Xenium5k
#121
jeffquinn-msk
closed
2 weeks ago
0
Increase Process Memory Definitions
#120
jeffquinn-msk
closed
1 month ago
0
Baysor as an nf-core module
#119
kbestak
opened
1 month ago
1
Add Accelerator Directive for AWS Batch
#118
jeffquinn-msk
closed
1 month ago
0
Add Cirro Config Files
#117
jeffquinn-msk
closed
1 month ago
0
Terminate Greedy Expansion When Model Becomes Less Certain About Celltype
#116
jeffquinn-msk
closed
3 weeks ago
0
Probability Vector Difference Norm
#115
jeffquinn-msk
closed
3 weeks ago
0
Plot Model Celltype Prediction with Segmentation Borders
#114
jeffquinn-msk
closed
1 month ago
0
Add Lilac Profile
#113
jeffquinn-msk
closed
1 month ago
0
Fix Container Definition for Spatialdata
#112
jeffquinn-msk
closed
1 month ago
0
Properly Convert Predictions to Probs for Non-Labeled Foreground Loss
#111
jeffquinn-msk
closed
1 month ago
0
Fix NaN Loss
#110
jeffquinn-msk
closed
1 month ago
0
Re-Assign to Correct Device During Setup Hook
#109
jeffquinn-msk
closed
1 month ago
0
Fix Handling of Weights
#108
jeffquinn-msk
closed
1 month ago
0
Try This
#107
jeffquinn-msk
closed
1 month ago
0
Include Version Config
#106
jeffquinn-msk
closed
1 month ago
0
Send Tensor to Device
#105
jeffquinn-msk
closed
1 month ago
0
Fix Integration Tests, Pin Container Versions
#104
jeffquinn-msk
closed
1 month ago
0
Make Even Loss Weighting Default
#103
jeffquinn-msk
closed
1 month ago
0
Add Marginal Likelihood Loss for Non-Foreground/Background Labeled Pixels
#102
jeffquinn-msk
closed
1 month ago
0
Save Val/Train Assignments, Some Various Bug Fixes
#101
jeffquinn-msk
closed
2 months ago
0
Add Label Free Segmentation
#100
jeffquinn-msk
closed
2 months ago
0
Fix Flakey Test
#99
jeffquinn-msk
closed
2 months ago
0
Set a Reasonable Default for N Dataloaders
#98
jeffquinn-msk
closed
2 months ago
0
Another Approach for Singularity Build
#97
jeffquinn-msk
closed
2 months ago
0
Try To Free Space for Singularity
#96
jeffquinn-msk
closed
2 months ago
0
Build Singularity Container
#95
jeffquinn-msk
closed
2 months ago
0
Fix Coloring
#94
jeffquinn-msk
closed
2 months ago
0
Fix Segmentation PLot
#93
jeffquinn-msk
closed
2 months ago
0
Update Docs
#92
jeffquinn-msk
closed
2 months ago
0
Fix Zero-Transcript Segment Edge Case
#91
jeffquinn-msk
closed
2 months ago
0
Improve Assignment of Celltypes to Segments, Fix Int Tests
#90
jeffquinn-msk
closed
2 months ago
0
Add Histogram, Celltype Area, Choropleth Plotting Functions
#89
jeffquinn-msk
closed
2 months ago
0
Fix Re-Training
#88
jeffquinn-msk
closed
2 months ago
0
Allow Explicit Resumption of Training
#87
jeffquinn-msk
closed
2 months ago
0
Improve Outputs
#86
jeffquinn-msk
closed
2 months ago
0
Feature Flag Loss Reweighting
#85
jeffquinn-msk
closed
2 months ago
0
No But Really Fix Sparse Anndata Generation
#84
jeffquinn-msk
closed
3 months ago
0
Fix Sparse Anndata Creation
#83
jeffquinn-msk
closed
3 months ago
0
Fix Loss Weighting
#82
jeffquinn-msk
closed
3 months ago
0
Downsample for Celltyping, Fix Celltyping Bug
#81
jeffquinn-msk
closed
3 months ago
0
Revert "Downsample Before Celltyping"
#80
jeffquinn-msk
closed
3 months ago
0
Downsample Before Celltyping
#79
jeffquinn-msk
closed
3 months ago
0
Fix Raster to Shape
#78
jeffquinn-msk
closed
3 months ago
0
Log Weighted and Raw Loss Separately
#77
jeffquinn-msk
closed
3 months ago
0
Next