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tansey-lab
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nuc2seg
Cell segmentation with deep learning
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Log Weighted and Raw Loss Separately
#77
jeffquinn-msk
closed
6 months ago
0
Improve Segment Step Performance
#76
jeffquinn-msk
closed
6 months ago
0
Filter Out Tiny Segmentations from Baysor
#75
jeffquinn-msk
closed
6 months ago
0
Implements Dynamic Even Loss Weighting
#74
jeffquinn-msk
closed
6 months ago
0
Fix Order of Operations Error
#73
jeffquinn-msk
closed
6 months ago
0
Remove Dedupe on Cell Column
#72
jeffquinn-msk
closed
6 months ago
0
Fix Wrong Dedupe Column
#71
jeffquinn-msk
closed
6 months ago
0
Improve Perf of Segment Method
#70
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Results Merge
#69
jeffquinn-msk
closed
6 months ago
0
Fix Gene Expression Plot
#68
jeffquinn-msk
closed
6 months ago
0
Handle Overlapping Polygons in AnnData Creation
#67
jeffquinn-msk
closed
6 months ago
0
Enable Passing Preproc
#66
jeffquinn-msk
closed
6 months ago
0
Improve Resources
#65
jeffquinn-msk
closed
6 months ago
0
Handle Bad Lines
#64
jeffquinn-msk
closed
6 months ago
0
Enable Docker NVIDIA
#63
jeffquinn-msk
closed
6 months ago
0
Fix File Sorting
#62
jeffquinn-msk
closed
6 months ago
0
Produce Adata From Baysor Results
#61
jeffquinn-msk
closed
6 months ago
0
Fix Baysor PostProcessing
#60
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Param Passing 2
#59
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Param Passing
#58
jeffquinn-msk
closed
6 months ago
0
Choose best Global BIC Chain
#57
jeffquinn-msk
closed
6 months ago
0
Add Marker Gene Plot
#56
jeffquinn-msk
closed
6 months ago
0
Fix Preprocessing Extent Bugs
#55
jeffquinn-msk
closed
6 months ago
0
Overhaul Baysor nf workflow
#54
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Pipeline, Part 2
#53
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Pipeline, Add Int Test
#52
jeffquinn-msk
closed
6 months ago
0
Add Sub-Loss Weighting
#51
jeffquinn-msk
closed
6 months ago
0
Add Segmentation To Prediction Plot
#50
jeffquinn-msk
closed
6 months ago
0
Fix Segmentation Plot Origin
#49
jeffquinn-msk
closed
6 months ago
0
Actually Use AdamW
#48
jeffquinn-msk
closed
6 months ago
0
Use Adam Optimizer
#47
jeffquinn-msk
closed
6 months ago
0
Baysor Benchmark Preprocessing/Postprocessing Tiling
#46
jeffquinn-msk
closed
6 months ago
0
Fix Baysor Preproc
#45
jeffquinn-msk
closed
7 months ago
0
Add Baysor Pipeline for Benchmark
#44
jeffquinn-msk
closed
7 months ago
0
Handle Parquet Column Being Read as Bytestring
#43
jeffquinn-msk
closed
7 months ago
0
Handle Missing Nucleus Distance Field
#42
jeffquinn-msk
closed
7 months ago
0
Add IF Benchmarking
#41
jeffquinn-msk
closed
7 months ago
0
Add Transcript Dispersion Permutation Test for finding Bad Transcripts
#40
jeffquinn-msk
closed
7 months ago
0
Run Celltyping With Multiple Random Initializations
#39
jeffquinn-msk
closed
7 months ago
0
Doc Corrections
#38
jeffquinn-msk
closed
7 months ago
0
Fix N Celltype Flags
#37
jeffquinn-msk
closed
7 months ago
0
Eliminate Bad Shapes
#36
jeffquinn-msk
closed
7 months ago
0
Doc Tidy Up
#35
jeffquinn-msk
closed
7 months ago
0
Add Documentation, Fix SD Generation
#34
jeffquinn-msk
closed
7 months ago
0
Fix Spatialdata Script
#33
jeffquinn-msk
closed
7 months ago
0
Celltype Estimation Plots and Improvements
#32
jeffquinn-msk
closed
7 months ago
0
Fix Container Build and Integration Test
#31
jeffquinn-msk
closed
7 months ago
0
Create Anndata and Spatialdata Outputs
#30
jeffquinn-msk
closed
7 months ago
0
Fix Container Build
#29
jeffquinn-msk
closed
7 months ago
0
Add Spatialdata Container
#28
jeffquinn-msk
closed
7 months ago
0
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