TPMS, Tree Pattern Matching Suite

TPMS is a Bioinformatics tool, designed to perform pattern-matching queries in a collection of phylogenetic trees.

Publication

TPMS: a set of utilities for querying collections of gene trees, 2013 Thomas Bigot, Vincent Daubin, Florent Lassalle and Guy Perrière BMC Bioinformatics 2013 14:109 DOI: 10.1186/1471-2105-14-109 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-109

Documentation

• installation / compilation https://github.com/tbigot/tpms/wiki/INSTALL

• __TPMS_MKDB (building collections)__ https://github.com/tbigot/tpms/wiki/tpms_mkdb

• __TPMS_QUERY (querying a collection)__ https://github.com/tbigot/tpms/wiki/tpms_query

• __TPMS_COMPUTATIONS__ https://github.com/tbigot/tpms/wiki/tpms_computations

More generally, please refer to the online wiki: https://github.com/tbigot/tpms/wiki/