tdsmith / ijroi

Reads ImageJ ROI files into numpy arrays.
MIT License
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ijroi |Build Status| |Coverage Status| |PyPI page| |MIT license|

Reads ImageJ <http://imagej.net/Welcome>__ ROIs into numpy arrays. Use it like:

.. code:: python

>>> import ijroi
>>> with open("my_roi.roi", "rb") as f:
...     roi = ijroi.read_roi(f)
...
>>> isinstance(roi, np.ndarray)
True

read_roi returns a Nx2 array, where each row is a (row, column) or (y, x) pair.

Based on Luis Pedro Coelho <https://github.com/luispedro>'s readroi.py gist <https://gist.github.com/luispedro/3437255>.

License

ijroi is offered under the MIT license.

Contributors

ijroi is maintained by Tim D. Smith. The core functionality was implemented by Luis Pedro Coelho.

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