annoto

Medical annotation tool

Live Demo

Dev

• http://dev.folivora.online/ (Api)

Setup

• Install python3, node, npm, nvm

• Frontend: cd static; nvm use; npm i; npm run lint

• Backend: cd api; python3 manage.py install {dev}

Run

• Backend: cd api; python3 manage.py run

• Frontend: cd static; npm run dev

Testing, Linting and Formatting

• Backend Full build: python3 manage.py build

• Backend Only tests: python3 manage.py test {--cov}

• Backend Format: python3 manage.py format

• Frontend: npm run lint, npm run test:e2e, npm run test:unit

Database

• Create database: python3 manage.py db-create

• Load test data into database: python3 manage.py db-reload

• Dump database content into JSON-file: python3 manage.py data-dump

• Delete and recreate database: python3 manage.py db-reset

• Create new Migration: python3 manage.py migration-create

• Apply (new) Migrations: python3 manage.py migration-apply

Docker

• Execute run-dev.sh to setup and start a dedicated development container.
  • Add the --local-data-dir argument if you want to mount your local ~/.annoto folder into the container
• Execute connect-dev.sh to open a new bash inside the (already running) development container.
• Execute exit-dev.sh to stop the development container.