mdocfile

SerialEM mdoc files as pandas dataframes.

mdocfile is Python package for working with SerialEM mdoc files.

Quickstart

mdocfile.read() will return the contents of an mdoc file as a pandas dataframe.

import mdocfile

df = mdocfile.read('my_mdoc_file.mdoc')

For writing valid mdoc files, please see writing mdoc files.

Installation

pip:

pip install mdocfile

Parsing from text

Mdoc.from_string().as_dataframe() will return the contents of string mdoc data as a pandas dataframe. This is useful for mdoc data that is not stored in a file (e.g. from a database or a web request).

from mdocfile.data_models import Mdoc

mdoc_data = ...

mdoc = Mdoc.from_string(mdoc_data).as_dataframe()